Miyakogusa Predicted Gene
- Lj2g3v3339530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3339530.1 Non Chatacterized Hit- tr|Q2PES4|Q2PES4_TRIPR
Putative fasciclin-like arabinogalactan protein FLA2
O,86.2,0,seg,NULL; Four repeated domains in the Fasciclin I fam,FAS1
domain; FAS1 domain,FAS1 domain; SUBFAMI,CUFF.40118.1
(1269 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70532 similar to UniRef100_A9XTM4 Cluster: Fasciclin-... 2516 0.0
gnl|LJGI|TC79314 similar to UniRef100_A9XTL5 Cluster: Fasciclin-... 220 2e-56
gnl|LJGI|AV425385 similar to UniRef100_A9XTM4 Cluster: Fasciclin... 145 8e-34
gnl|LJGI|TC76905 similar to UniRef100_A9XTL8 Cluster: Fasciclin-... 56 6e-07
>gnl|LJGI|TC70532 similar to UniRef100_A9XTM4 Cluster: Fasciclin-like arabinogalactan
protein 19; n=1; Gossypium hirsutum|Rep: Fasciclin-like
arabinogalactan protein 19 - Gossypium hirsutum (Upland
cotton) (Gossypium mexicanum), partial (80%)
Length = 1628
Score = 2516 bits (1269), Expect = 0.0
Identities = 1269/1269 (100%)
Strand = Plus / Plus
Query: 1 atgaagcaattcccactacttgccacttactctcttgtcttcttcttcctcatagcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 atgaagcaattcccactacttgccacttactctcttgtcttcttcttcctcatagcaacc 197
Query: 61 atttcacttccttcctccaccaccgcagccgccgccgccaatggcagccacaacattacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atttcacttccttcctccaccaccgcagccgccgccgccaatggcagccacaacattacc 257
Query: 121 cgcattctcgccaaacaccccgacttctccaccttcaaccactacctcaccctcacccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgcattctcgccaaacaccccgacttctccaccttcaaccactacctcaccctcacccac 317
Query: 181 ctcgccggcgagatcaaccaccgccaaaccatcaccatcctcgccatcgacaacgccgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcgccggcgagatcaaccaccgccaaaccatcaccatcctcgccatcgacaacgccgcc 377
Query: 241 atgtcctccctcctcgacaagcacctcaccctctccaccctaaaaaacgtcctctccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgtcctccctcctcgacaagcacctcaccctctccaccctaaaaaacgtcctctccctc 437
Query: 301 cacgtcctcgtcgactactttggcgccaaaaagctccaccagataaccaacggaaccacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacgtcctcgtcgactactttggcgccaaaaagctccaccagataaccaacggaaccacc 497
Query: 361 ctcgtctcctccatgttccaggccaccggctccgccgccggaaccgccggctacgtcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcgtctcctccatgttccaggccaccggctccgccgccggaaccgccggctacgtcaac 557
Query: 421 atcaccaacctcaaaggaggcaaagtaggcttcgccgctgaggacaacgacggcctccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atcaccaacctcaaaggaggcaaagtaggcttcgccgctgaggacaacgacggcctccac 617
Query: 481 tcattctacgtcaaatcagtggaagagcttccatacgtcatctctgttctcgaaatctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcattctacgtcaaatcagtggaagagcttccatacgtcatctctgttctcgaaatctct 677
Query: 541 caacccctgagctccgccgacgccgaagcaccgaccgcagctccgagcgatatcgacgtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caacccctgagctccgccgacgccgaagcaccgaccgcagctccgagcgatatcgacgtc 737
Query: 601 atctccatcatgtccaaacaaggctgcaaagccttcgcagatttactcagaacctcgaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atctccatcatgtccaaacaaggctgcaaagccttcgcagatttactcagaacctcgaaa 797
Query: 661 gctcttcccacattcaaggaaaacgttaatggcggtttaaccgtgttctgccccaccgac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gctcttcccacattcaaggaaaacgttaatggcggtttaaccgtgttctgccccaccgac 857
Query: 721 agcgccgtcaacggattcctccccaagtacaagaacctcaccgattcccaaaaggtttct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agcgccgtcaacggattcctccccaagtacaagaacctcaccgattcccaaaaggtttct 917
Query: 781 ctcttgctgtaccacggtgttcctgtttaccaatcgttgcagatgctcaagtccaacaac 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ctcttgctgtaccacggtgttcctgtttaccaatcgttgcagatgctcaagtccaacaac 977
Query: 841 ggaatcatgaacactctggctacagagggtgctaacaagtacgattttacagtgcagaac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ggaatcatgaacactctggctacagagggtgctaacaagtacgattttacagtgcagaac 1037
Query: 901 gatggggaagatgtgaatttggaaaccaaggttaacactgctgggattattgggacattg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 gatggggaagatgtgaatttggaaaccaaggttaacactgctgggattattgggacattg 1097
Query: 961 attgatcaagacccttttgtggtgtacaagattagcaaggtgttgatgcctagagagttg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 attgatcaagacccttttgtggtgtacaagattagcaaggtgttgatgcctagagagttg 1157
Query: 1021 tttaaaggtgttactgagaaaactgtgtctcctgcagagtcacctaagccagcaaagaag 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 tttaaaggtgttactgagaaaactgtgtctcctgcagagtcacctaagccagcaaagaag 1217
Query: 1081 aagagtaagagcactaagaaggggaatgctgatgatgatgctgcagattcacctgcagat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 aagagtaagagcactaagaaggggaatgctgatgatgatgctgcagattcacctgcagat 1277
Query: 1141 ggacctgcagatgatgactcagataatcagacagctgctgatgacaacagtggtgttact 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 ggacctgcagatgatgactcagataatcagacagctgctgatgacaacagtggtgttact 1337
Query: 1201 ggattgaatcaagggttcagattcaccatggttttcttcagtttggttattggatttttg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 ggattgaatcaagggttcagattcaccatggttttcttcagtttggttattggatttttg 1397
Query: 1261 gttctataa 1269
|||||||||
Sbjct: 1398 gttctataa 1406
>gnl|LJGI|TC79314 similar to UniRef100_A9XTL5 Cluster: Fasciclin-like arabinogalactan
protein 10; n=1; Gossypium hirsutum|Rep: Fasciclin-like
arabinogalactan protein 10 - Gossypium hirsutum (Upland
cotton) (Gossypium mexicanum), partial (67%)
Length = 982
Score = 220 bits (111), Expect = 2e-56
Identities = 303/367 (82%)
Strand = Plus / Plus
Query: 108 ccacaacattacccgcattctcgccaaacaccccgacttctccaccttcaaccactacct 167
||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 127 ccacaacatcaccggcattctcgccaagcaccccgagttctccaccttcaaccactacct 186
Query: 168 caccctcacccacctcgccggcgagatcaaccaccgccaaaccatcaccatcctcgccat 227
|||||||||||||||||||| |||||||||||| || || |||||| || |||| |
Sbjct: 187 caccctcacccacctcgccgccgagatcaaccaacggaccacaatcaccgtctgcgccgt 246
Query: 228 cgacaacgccgccatgtcctccctcctcgacaagcacctcaccctctccaccctaaaaaa 287
| |||||||||||||| | ||||||| || |||| | || ||||| | || ||
Sbjct: 247 caacaacgccgccatggacgacctcctctcaaaacacccatcaatcaccaccgtcaagaa 306
Query: 288 cgtcctctccctccacgtcctcgtcgactactttggcgccaaaaagctccaccagataac 347
| |||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||
Sbjct: 307 catcctctccctccacgtcctcctcgactacttcggcgccaagaagctccaccagatcac 366
Query: 348 caacggaaccaccctcgtctcctccatgttccaggccaccggctccgccgccggaaccgc 407
|||||| ||| |||||| | || | |||| ||| ||||||||| ||||| | || ||||
Sbjct: 367 caacggcaccgccctcgccgccacaatgtaccaagccaccggcaccgccccgggctccgc 426
Query: 408 cggctacgtcaacatcaccaacctcaaaggaggcaaagtaggcttcgccgctgaggacaa 467
||| | ||||||||||||| ||||| || || ||||| || |||| ||| ||| ||||
Sbjct: 427 cggattcgtcaacatcaccgacctccgcggcgggaaagtcggattcggcgccgagaacaa 486
Query: 468 cgacggc 474
|||||||
Sbjct: 487 cgacggc 493
>gnl|LJGI|AV425385 similar to UniRef100_A9XTM4 Cluster: Fasciclin-like arabinogalactan
protein 19; n=1; Gossypium hirsutum|Rep: Fasciclin-like
arabinogalactan protein 19 - Gossypium hirsutum (Upland
cotton) (Gossypium mexicanum), partial (16%)
Length = 388
Score = 145 bits (73), Expect = 8e-34
Identities = 88/93 (94%)
Strand = Plus / Plus
Query: 108 ccacaacattacccgcattctcgccaaacaccccgacttctccaccttcaaccactacct 167
||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 228 ccacaacatcaccggcattctcgccaagcaccccgagttctccaccttcaaccactacct 287
Query: 168 caccctcacccacctcgccggcgagatcaacca 200
|||||||||||||||||||| ||||||||||||
Sbjct: 288 caccctcacccacctcgccgccgagatcaacca 320
>gnl|LJGI|TC76905 similar to UniRef100_A9XTL8 Cluster: Fasciclin-like arabinogalactan
protein 13; n=1; Gossypium hirsutum|Rep: Fasciclin-like
arabinogalactan protein 13 - Gossypium hirsutum (Upland
cotton) (Gossypium mexicanum), partial (88%)
Length = 1576
Score = 56.0 bits (28), Expect = 6e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 181 ctcgccggcgagatcaaccaccgccaaaccatcaccatcctcgccatc 228
||||||| |||||||||| |||||||||||||||| |||||| ||||
Sbjct: 239 ctcgccgacgagatcaacagccgccaaaccatcaccgtcctcgtcatc 286