Miyakogusa Predicted Gene
- Lj2g3v3339010.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3339010.2 Non Chatacterized Hit- tr|I1JJR4|I1JJR4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20815
PE,91.44,0,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RNA
recogni,CUFF.40071.2
(1440 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome... 133 3e-30
gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosom... 105 8e-22
gnl|LJGI|FS353484 weakly similar to UniRef100_A7Q348 Cluster: Ch... 103 3e-21
gnl|LJGI|TC81664 weakly similar to UniRef100_A7P0F4 Cluster: Chr... 56 6e-07
>gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (58%)
Length = 2146
Score = 133 bits (67), Expect = 3e-30
Identities = 205/251 (81%)
Strand = Plus / Plus
Query: 310 cgcacaagaaagatatttgttggaggtttagcatcaacagtgacagagagcgatttcaag 369
||||||| |||||||||||||||||| || |||| ||| | || ||||| ||||| |||
Sbjct: 442 cgcacaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaag 501
Query: 370 aagtacttcgatcagtttgggactataacagatgttgtagtgatgtatgatcacaacact 429
|| ||||| ||||||||||| || || ||||||||||| ||||||||||| || |||||
Sbjct: 502 aactactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacaca 561
Query: 430 cagaggccaagaggctttggatttatcacttatgattctgaagaggctgttgacaaggtc 489
|| ||||| ||||| |||||||| || || | ||||||||| || | ||||| || ||
Sbjct: 562 caaaggcctagaggttttggattcataacctttgattctgaggaaggagttgagaaagtt 621
Query: 490 ttactgaagacatttcatgaattgaatggtaaaatggttgaggtcaagcgagcagttcct 549
| || || ||||||||| |||||||||||||||||||||| ||| |||| |||||
Sbjct: 622 ctgtacaaaacttttcatgaactgaatggtaaaatggttgaggttaagagagctgttccc 681
Query: 550 aaggagttatc 560
||||| |||||
Sbjct: 682 aaggaattatc 692
Score = 61.9 bits (31), Expect = 1e-08
Identities = 111/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 28 attggtggaatatcgtgggacacaactgaagagcgactccgggagtatttc-agtgctta 86
|||||||| || || |||||||||| |||||| |||||| | |||||||| || |||
Sbjct: 154 attggtgggatttcctgggacacaaatgaagaacgactcagacagtatttccagaactt- 212
Query: 87 tggtgaggttgtggaagcagtgataatgaaggatcggacgacgggtagagcccgtggatt 146
||| || || || ||||| ||||||||||||||||| || ||||| | |||||||| ||
Sbjct: 213 tggagatgtggttgaagctgtgataatgaaggatcgcaccacggggcgtgcccgtggttt 272
Query: 147 tggttttgttgtttt 161
||| |||||||||||
Sbjct: 273 tggatttgttgtttt 287
>gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (33%)
Length = 622
Score = 105 bits (53), Expect = 8e-22
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 310 cgcacaagaaagatatttgttggaggtttagcatcaacagtgacagagagcgatttcaag 369
||||||| |||||||||||||||||| || |||| ||| | || ||||| ||||| |||
Sbjct: 482 cgcacaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaag 541
Query: 370 aagtacttcgatcagtttgggactataacagatgttgtagtgatgtatgatcacaacact 429
|| ||||| ||||||||||| || || ||||||||||| ||||||||||| || |||||
Sbjct: 542 aactactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacaca 601
Query: 430 cagaggccaagaggctttgga 450
|| ||||| ||||| ||||||
Sbjct: 602 caaaggcctagaggttttgga 622
Score = 61.9 bits (31), Expect = 1e-08
Identities = 111/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 28 attggtggaatatcgtgggacacaactgaagagcgactccgggagtatttc-agtgctta 86
|||||||| || || |||||||||| |||||| |||||| | |||||||| || |||
Sbjct: 194 attggtgggatttcctgggacacaaatgaagaacgactcagacagtatttccagaactt- 252
Query: 87 tggtgaggttgtggaagcagtgataatgaaggatcggacgacgggtagagcccgtggatt 146
||| || || || ||||| ||||||||||||||||| || ||||| | |||||||| ||
Sbjct: 253 tggagatgtggttgaagctgtgataatgaaggatcgcaccacggggcgtgcccgtggttt 312
Query: 147 tggttttgttgtttt 161
||| |||||||||||
Sbjct: 313 tggatttgttgtttt 327
>gnl|LJGI|FS353484 weakly similar to UniRef100_A7Q348 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 649
Score = 103 bits (52), Expect = 3e-21
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1297 aattctgagcgagatggatctggcccctttggttatggacttggtggtgcagcttcagat 1356
|||| ||||| |||||||| || |||||||||||||||||||| | | ||||||||||
Sbjct: 648 aattttgagccagatggatttgatccctttggttatggacttggcgtcgtagcttcagat 589
Query: 1357 gtttctgccaagagttcacctggttatgttggtggttatacagttaacaaaagacagcca 1416
||||||||||| |||| || ||||||||||| |||||||||| ||||| || ||||||
Sbjct: 588 gtttctgccaaatgttctccaggttatgttggaagttatacagtcaacaagaggcagcca 529
Query: 1417 aata 1420
||||
Sbjct: 528 aata 525
>gnl|LJGI|TC81664 weakly similar to UniRef100_A7P0F4 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (28%)
Length = 1090
Score = 56.0 bits (28), Expect = 6e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1324 tttggttatggacttggtggtgcagcttcaga 1355
||||||||||||||||||||| ||||||||||
Sbjct: 553 tttggttatggacttggtggtacagcttcaga 584