Miyakogusa Predicted Gene

Lj2g3v3337600.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3337600.1 tr|Q5W964|Q5W964_9BRYO PpPPR_98 protein
OS=Physcomitrella patens GN=PpPPR_98 PE=2 SV=1,29.41,2e-18,no
description,Tetratricopeptide-like helical; seg,NULL; PPR:
pentatricopeptide repeat domain,Pentat,gene.g44630.t1.1
         (1827 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC593204 weakly similar to UniRef100_A7PEW9 Cluster: Ch...   731   0.0  

>gnl|LJGI|DC593204 weakly similar to UniRef100_A7PEW9 Cluster: Chromosome chr11
           scaffold_13, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (9%)
          Length = 586

 Score =  731 bits (369), Expect = 0.0
 Identities = 384/389 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcataaacccactttggtttcatggaacctgatcatcagctgctacgtccacaaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atgcataaacccactttggtttcatggaacctgatcatcagctgctacgtccacaaccac 257

                                                                       
Query: 61  cgttccaacgatgcccttctcctctttcgccaaatgctccatcacgacctcctccctgat 120
           ||||||||||||    || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgttccaacgatttttttttcctctttcgccaaatgctccatcacgacctcctccctgat 317

                                                                       
Query: 121 ggtttcactctcccatgcgtcatcaaggggtgttctcgcttgcatgctgttcaggaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggtttcactctcccatgcgtcatcaaggggtgttctcgcttgcatgctgttcaggaaggg 377

                                                                       
Query: 181 aaacagattcatgggtatgtcctcaaaatcgggtttggctttgataaatttgtgcagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaacagattcatgggtatgtcctcaaaatcgggtttggctttgataaatttgtgcagagc 437

                                                                       
Query: 241 agtttggttaacatgtatgctaagtggggtgagatgggtttggctaggaaggtgtttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agtttggttaacatgtatgctaagtggggtgagatgggtttggctaggaaggtgtttgat 497

                                                                       
Query: 301 aaaatggttgatagagatgtggtgtcatggaactctttgattgatgggtacgcgagaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaaatggttgatagagatgtggtgtcatggaactctttgattgatgggtacgcgagaaat 557

                                        
Query: 361 gggaatgttgaggtggcaatgaagctgtt 389
           |||||||||||||||||||||||||||||
Sbjct: 558 gggaatgttgaggtggcaatgaagctgtt 586