Miyakogusa Predicted Gene
- Lj2g3v3337560.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3337560.1 Non Chatacterized Hit- tr|I3T0E0|I3T0E0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,Chlorophyll
a-b binding protein,Chlorophyll a/b binding protein domain; SUBFAMILY
NOT NAMED,NULL; CH,CUFF.40111.1
(792 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68384 homologue to UniRef100_Q93YG3 Cluster: Chloroph... 1570 0.0
gnl|LJGI|CN825826 similar to UniRef100_Q93YG3 Cluster: Chlorophy... 295 2e-79
gnl|LJGI|TC76198 homologue to UniRef100_P09756 Cluster: Chloroph... 190 9e-48
gnl|LJGI|TC70468 homologue to UniRef100_Q40961 Cluster: Light-ha... 147 1e-34
gnl|LJGI|AV422060 homologue to UniRef100_Q1A179 Cluster: Chlorop... 94 2e-18
gnl|LJGI|AV422513 homologue to UniRef100_P09756 Cluster: Chlorop... 74 1e-12
gnl|LJGI|TC76441 homologue to UniRef100_Q9XQB1 Cluster: LHCII ty... 68 9e-11
gnl|LJGI|AV422722 similar to UniRef100_Q9XQB1 Cluster: LHCII typ... 64 1e-09
gnl|LJGI|TC61949 homologue to UniRef100_A7P1F1 Cluster: Chromoso... 64 1e-09
gnl|LJGI|BP036028 homologue to UniRef100_A7P1F1 Cluster: Chromos... 54 1e-06
>gnl|LJGI|TC68384 homologue to UniRef100_Q93YG3 Cluster: Chlorophyll a/b binding
protein type II precursor; n=2; eurosids I|Rep:
Chlorophyll a/b binding protein type II precursor -
Glycine max (Soybean), complete
Length = 1345
Score = 1570 bits (792), Expect = 0.0
Identities = 792/792 (100%)
Strand = Plus / Plus
Query: 1 atggccacctctgctatccagcaatcagcattcactggccagactgctttgaagcaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atggccacctctgctatccagcaatcagcattcactggccagactgctttgaagcaggga 347
Query: 61 aatgagctcctccgcaaggctggtggctttggcaaaggtcgctttaccatgcgtcgtact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aatgagctcctccgcaaggctggtggctttggcaaaggtcgctttaccatgcgtcgtact 407
Query: 121 gtgaagagtgctcctcagagcatttggtatggccctgaccgtcccaagtacttgggtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtgaagagtgctcctcagagcatttggtatggccctgaccgtcccaagtacttgggtcct 467
Query: 181 ttctctgagcaaattccatcatacctgactggtgaattccctggtgactacggatgggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttctctgagcaaattccatcatacctgactggtgaattccctggtgactacggatgggac 527
Query: 241 acagctggattatcagctgaccccgaaaccttcgccaagaaccgtgagctcgaggtgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acagctggattatcagctgaccccgaaaccttcgccaagaaccgtgagctcgaggtgatt 587
Query: 301 cacagcagatgggccatgcttggtgccttgggatgcaccttcccagaaatccttgaaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cacagcagatgggccatgcttggtgccttgggatgcaccttcccagaaatccttgaaagg 647
Query: 361 aatggtgtcaaattcggtgaggcagtgtggttcaaggctggtgcccagatcttctctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aatggtgtcaaattcggtgaggcagtgtggttcaaggctggtgcccagatcttctctgag 707
Query: 421 ggtggccttgactatttaggcaacccaaacctgatccatgctcagagcatccttgcaatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggtggccttgactatttaggcaacccaaacctgatccatgctcagagcatccttgcaatc 767
Query: 481 tgggctactcaggttgtgctcatgggattaattgaaggctacagggttggtggaggaccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgggctactcaggttgtgctcatgggattaattgaaggctacagggttggtggaggaccc 827
Query: 541 cttggtgaaggactagacccactttacccaggtggtgcctttgacccacttggtttggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 cttggtgaaggactagacccactttacccaggtggtgcctttgacccacttggtttggct 887
Query: 601 gatgaccctgatgcatttgcagagttgaaggtgaaggaactcaagaacggtcgattggca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gatgaccctgatgcatttgcagagttgaaggtgaaggaactcaagaacggtcgattggca 947
Query: 661 atgttctccatgtttggcttctttgttcaggccattgttactggcaagggccctattcag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 atgttctccatgtttggcttctttgttcaggccattgttactggcaagggccctattcag 1007
Query: 721 aacctttacgaccatgttgctgaccctgttgccaacaatgcttgggcttttgccactaac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aacctttacgaccatgttgctgaccctgttgccaacaatgcttgggcttttgccactaac 1067
Query: 781 ttcgtccctgga 792
||||||||||||
Sbjct: 1068 ttcgtccctgga 1079
>gnl|LJGI|CN825826 similar to UniRef100_Q93YG3 Cluster: Chlorophyll a/b binding
protein type II precursor; n=2; eurosids I|Rep:
Chlorophyll a/b binding protein type II precursor -
Glycine max (Soybean), partial (19%)
Length = 726
Score = 295 bits (149), Expect = 2e-79
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 atggccacctctgctatccagcaatcagcattcactggccagactgctttgaagcaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atggccacctctgctatccagcaatcagcattcactggccagactgctttgaagcaggga 93
Query: 61 aatgagctcctccgcaaggctggtggctttggcaaaggtcgctttaccatgcgtcgtact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aatgagctcctccgcaaggctggtggctttggcaaaggtcgctttaccatgcgtcgtact 153
Query: 121 gtgaagagtgctcctcagagcatttggta 149
|||||||||||||||||||||||||||||
Sbjct: 154 gtgaagagtgctcctcagagcatttggta 182
>gnl|LJGI|TC76198 homologue to UniRef100_P09756 Cluster: Chlorophyll a-b binding
protein 3, chloroplast precursor; n=1; Glycine max|Rep:
Chlorophyll a-b binding protein 3, chloroplast precursor
- Glycine max (Soybean), partial (98%)
Length = 1119
Score = 190 bits (96), Expect = 9e-48
Identities = 467/588 (79%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 206 tgactggtgaattccctggtgactacggatgggacacagctggattatcagctgaccccg 265
|||| ||||| ||||| ||||||||||| |||||||| ||||| | || ||||||||||
Sbjct: 271 tgaccggtgagttccccggtgactacggctgggacactgctgggctttctgctgaccccg 330
Query: 266 aaaccttcgccaagaaccgtgagctcgaggtgattcacagcagatgggccatgcttggtg 325
| || |||||||||||||||||||| |||||||| ||| || ||||||||| | || |
Sbjct: 331 agacattcgccaagaaccgtgagcttgaggtgatccactctaggtgggccatgttgggag 390
Query: 326 ccttgggatgcaccttcccagaaatccttgaaaggaatggtgtcaaattcggtgaggcag 385
| ||||| || |||||||| || | | | || || || |||||||||||||| |
Sbjct: 391 ctttgggctgtgttttcccagagctcttggcccgcaacggggttaaattcggtgaggctg 450
Query: 386 tgtggttcaaggctggtgcccagatcttctctgagggtggccttgactatttaggcaacc 445
|||||||||||||||| | || |||||| |||||||| |||||||| || |||||||
Sbjct: 451 tgtggttcaaggctgggtcacaaatcttcagcgagggtgggcttgactacttgggcaacc 510
Query: 446 caaacctgatccatgctcagagcatccttgcaatctgggctactcaggttgtgctcatgg 505
| | |||| |||| ||||||||||| |||||||| ||||| ||||||||| | | ||||
Sbjct: 511 cgagcctggtccacgctcagagcattcttgcaatttgggccactcaggttatcttgatgg 570
Query: 506 gattaattgaaggctacagggttggtggaggaccccttggtgaag-gactagacccactt 564
|| | |||| || ||| | ||| ||| || || |||||||| | ||| ||||||||
Sbjct: 571 gagcagttgagggttaccgtattgctggtgggcctcttggtgaggtgac-cgacccactc 629
Query: 565 tacccaggtggtgcctttgacccacttggtttggctgatgaccctgatgcatttgcagag 624
||||||||||| |||||||||| | || | ||||||||||| || || ||||| |||
Sbjct: 630 tacccaggtggcagctttgacccattgggccttgctgatgacccagaggcttttgctgag 689
Query: 625 ttgaaggtgaaggaactcaagaacggtcgattggcaatgttctccatgtttggcttcttt 684
| || ||||||||||||||||| || | ||||| |||||||| |||||||| ||||||
Sbjct: 690 cttaaagtgaaggaactcaagaatggaaggttggccatgttctcaatgtttggattcttt 749
Query: 685 gttcaggccattgttactggcaagggccctattcagaacctttacgaccatgttgctgac 744
||||| || ||||| || || ||||| ||| | |||||||| ||||| || |||||
Sbjct: 750 gttcaagctattgtgaccggaaaggggcctttggagaaccttgcagaccacctttctgac 809
Query: 745 cctgttgccaacaatgcttgggcttttgccactaacttcgtccctgga 792
|| ||| ||||||||| ||||| | |||||| ||||| |||||||||
Sbjct: 810 ccagttaacaacaatgcctgggcctatgccaccaactttgtccctgga 857
>gnl|LJGI|TC70468 homologue to UniRef100_Q40961 Cluster: Light-harvesting chlorophyll
a/b-binding protein precursor; n=1; Prunus persica|Rep:
Light-harvesting chlorophyll a/b-binding protein
precursor - Prunus persica (Peach), partial (96%)
Length = 1079
Score = 147 bits (74), Expect = 1e-34
Identities = 469/598 (78%), Gaps = 2/598 (0%)
Strand = Plus / Plus
Query: 196 ccatcatacctgactggtgaattccctggtgactacggatgggacacagctggattatca 255
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||| | ||
Sbjct: 272 ccatcctacctcactggtgaattcccaggcgactatggttgggacactgccggactttct 331
Query: 256 gctgaccccgaaaccttcgccaagaaccgtgagctcgaggtgattcacagcagatgggcc 315
|||||||| || || || || || |||||||| || ||||| |||||||| |||||||||
Sbjct: 332 gctgacccagagacatttgcgaaaaaccgtgaacttgaggtcattcacagtagatgggcc 391
Query: 316 atgcttggtgccttgggatgcaccttcccagaaatccttgaaaggaatggtgtcaaattc 375
||| | || ||| | || || |||||| || || | | | || ||||| || ||
Sbjct: 392 atgttgggagccctaggctgtgtcttccccgagctcttggcccgcaacggtgtgaagttt 451
Query: 376 ggtgaggcagtgtggttcaaggctggtgcccagatcttctctgagggtggccttgactat 435
|||||||| |||||||||||||| || |||| || ||| ||| ||||| ||||||||
Sbjct: 452 ggtgaggctgtgtggttcaaggccgggtcccaaattttcagtgaaggtggacttgactac 511
Query: 436 ttaggcaacccaaacctgatccatgctcagagcatccttgcaatctgggctactcaggtt 495
|| || ||||| | ||| ||||||| || ||||| || ||||||||||| || || |||
Sbjct: 512 ttgggtaacccgagcctagtccatgcacaaagcattctcgcaatctgggccacccaagtt 571
Query: 496 gtgctcatgggattaattgaaggctacagggttggtggaggaccccttggtgaag-gact 554
| | ||||| ||||||| ||| | ||| ||| || || |||||||| | ||||
Sbjct: 572 atcttgatgggtgccgttgaaggttaccgtattgctggtgggccacttggtgaggtgact 631
Query: 555 agacccactttacccaggtggtgcctttgacccacttggtttggctgatgaccctgatgc 614
|||||||| ||||||||||| |||||||||| | || | ||||| ||||| || ||
Sbjct: 632 -gacccactgtacccaggtggcagctttgacccattgggccttgctgacgacccagaagc 690
Query: 615 atttgcagagttgaaggtgaaggaactcaagaacggtcgattggcaatgttctccatgtt 674
|||||||| ||||||||||| ||||| || || ||| | || || ||||||||||||||
Sbjct: 691 ttttgcagaattgaaggtgaaagaactaaaaaatggtaggttagccatgttctccatgtt 750
Query: 675 tggcttctttgttcaggccattgttactggcaagggccctattcagaacctttacgacca 734
||| ||||||||||| || ||||||||||| ||||| ||| | |||||||| |||||
Sbjct: 751 tggtttctttgttcaagctattgttactggaaagggacctttggagaaccttgcagacca 810
Query: 735 tgttgctgaccctgttgccaacaatgcttgggcttttgccactaacttcgtccctgga 792
|||||||||| || ||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 811 ccttgctgacccagtcaacaacaatgcttgggcctttgccacaaactttgtccctgga 868
>gnl|LJGI|AV422060 homologue to UniRef100_Q1A179 Cluster: Chloroplast chlorophyll a/b
binding protein; n=1; Pachysandra terminalis|Rep:
Chloroplast chlorophyll a/b binding protein -
Pachysandra terminalis, partial (50%)
Length = 463
Score = 93.7 bits (47), Expect = 2e-18
Identities = 164/203 (80%)
Strand = Plus / Plus
Query: 195 tccatcatacctgactggtgaattccctggtgactacggatgggacacagctggattatc 254
|||||| ||||| |||||||| ||||| |||||||| || |||||||| ||||| | ||
Sbjct: 240 tccatcctaccttactggtgagttcccaggtgactatggctgggacactgctgggctttc 299
Query: 255 agctgaccccgaaaccttcgccaagaaccgtgagctcgaggtgattcacagcagatgggc 314
|||||||| || || || |||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 300 tgctgacccagagacatttgccaagaaccgtgaacttgaggtcatccacagtagatgggc 359
Query: 315 catgcttggtgccttgggatgcaccttcccagaaatccttgaaaggaatggtgtcaaatt 374
|||| | || |||||||| || ||||| || || | | | || |||||||||||
Sbjct: 360 catgttgggagccttgggctgtgttttccctgagctcttggcccgtaacggtgtcaaatt 419
Query: 375 cggtgaggcagtgtggttcaagg 397
||||||||| |||||||||||||
Sbjct: 420 cggtgaggctgtgtggttcaagg 442
>gnl|LJGI|AV422513 homologue to UniRef100_P09756 Cluster: Chlorophyll a-b binding
protein 3, chloroplast precursor; n=1; Glycine max|Rep:
Chlorophyll a-b binding protein 3, chloroplast precursor
- Glycine max (Soybean), partial (18%)
Length = 213
Score = 73.8 bits (37), Expect = 1e-12
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 206 tgactggtgaattccctggtgactacggatgggacacagctggattatcagctgaccccg 265
|||| ||||| ||||| ||||||||||| |||||||| ||||| | || ||||||||||
Sbjct: 133 tgaccggtgagttccccggtgactacggctgggacactgctgggctttctgctgaccccg 192
Query: 266 aaaccttcgccaagaaccgtg 286
| || ||||||||||||||||
Sbjct: 193 agacattcgccaagaaccgtg 213
>gnl|LJGI|TC76441 homologue to UniRef100_Q9XQB1 Cluster: LHCII type III chlorophyll
a/b binding protein; n=1; Vigna radiata var.
radiata|Rep: LHCII type III chlorophyll a/b binding
protein - Phaseolus aureus (Mung bean) (Vigna radiata),
complete
Length = 1198
Score = 67.9 bits (34), Expect = 9e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 655 ttggcaatgttctccatgtttggcttctttgttcaggccattgttactgg 704
||||| ||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 834 ttggccatgttctccatgtttggtttctttgttcaagccattgtcactgg 883
Score = 63.9 bits (32), Expect = 1e-09
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 199 tcatacctgactggtgaattccctggtgactacggatgggacacagctggattatcagct 258
|||||| | ||||| |||||||| ||||| || ||||||||||| ||||| ||||| |||
Sbjct: 372 tcatacttaactggagaattcccaggtgattatggatgggacactgctgggttatctgct 431
Query: 259 gaccccgaaaccttcgccaagaac 282
||||| ||| | || |||||||||
Sbjct: 432 gaccctgaagcatttgccaagaac 455
>gnl|LJGI|AV422722 similar to UniRef100_Q9XQB1 Cluster: LHCII type III chlorophyll a/b
binding protein; n=1; Vigna radiata var. radiata|Rep:
LHCII type III chlorophyll a/b binding protein -
Phaseolus aureus (Mung bean) (Vigna radiata), partial
(50%)
Length = 521
Score = 63.9 bits (32), Expect = 1e-09
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 199 tcatacctgactggtgaattccctggtgactacggatgggacacagctggattatcagct 258
|||||| | ||||| |||||||| ||||| || ||||||||||| ||||| ||||| |||
Sbjct: 322 tcatacttaactggagaattcccaggtgattatggatgggacactgctgggttatctgct 381
Query: 259 gaccccgaaaccttcgccaagaac 282
||||| ||| | || |||||||||
Sbjct: 382 gaccctgaagcatttgccaagaac 405
>gnl|LJGI|TC61949 homologue to UniRef100_A7P1F1 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 1085
Score = 63.9 bits (32), Expect = 1e-09
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 579 ctttgacccacttggtttggctgatgaccctgatgcatttgcagagttgaaggtgaagga 638
||||||||| ||||| | ||||||||||||| | ||||| ||| | ||||| |||||
Sbjct: 598 ctttgaccctcttggccttgctgatgaccctgtcacttttgctgagcttaaggttaagga 657
Query: 639 actcaagaacggtcgattggcaatgttctccatgtttggcttctttgttcaggccattgt 698
||||||| || | ||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct: 658 gatcaagaatggaaggttggccatgttctccatgtttggtttctttgtccaagccattgt 717
Score = 54.0 bits (27), Expect = 1e-06
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 206 tgactggtgaattccctggtgactacggatgggacacagctggattatcagctga 260
||||||| |||||||| || ||||| ||||||||||| |||||||| || |||||
Sbjct: 219 tgactggagaattcccaggggactatggatgggacactgctggattgtctgctga 273
Score = 54.0 bits (27), Expect = 1e-06
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 383 cagtgtggttcaaggctggtgcccagatcttctctgagggtggccttgactatttaggca 442
|||| |||||||| ||||| || ||||| ||||| || |||||||||||||| || || |
Sbjct: 399 cagtttggttcaaagctggagctcagatattctcagaaggtggccttgactacttgggga 458
Query: 443 acccaaacctgatccatgctcagagcatcct 473
| || ||||| | ||||| |||||||||||
Sbjct: 459 atcccaaccttgttcatgcacagagcatcct 489
>gnl|LJGI|BP036028 homologue to UniRef100_A7P1F1 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 483
Score = 54.0 bits (27), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 199 tcatacctgactggtgaattccctggtgactacggatgggacacagctggattatcagct 258
|||||| ||||||| |||||||| | ||||| ||||||||||| |||||||| || |||
Sbjct: 316 tcatacttgactggagaattcccagnggactatggatgggacactgctggattgtctgct 375
Query: 259 ga 260
||
Sbjct: 376 ga 377