Miyakogusa Predicted Gene

Lj2g3v3337340.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3337340.1 Non Chatacterized Hit- tr|C0PDX0|C0PDX0_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.4,8e-19,no
description,NULL; A Receptor for Ubiquitination Targets,F-box domain,
cyclin-like; SUBFAMILY NOT ,gene.g44622.t1.1
         (478 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP050712 homologue to UniRef100_Q6XYB2 Cluster: LP2654;...   492   e-138

>gnl|LJGI|BP050712 homologue to UniRef100_Q6XYB2 Cluster: LP2654; n=1; Homo
           sapiens|Rep: LP2654 - Homo sapiens (Human), partial (7%)
          Length = 555

 Score =  492 bits (248), Expect = e-138
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 231 ggtggcgcttggagggtacaggaggctgtacatggtgtgcgtgaggccggtgctgagtcg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggtggcgcttggagggtacaggaggctgtacatggtgtgcgtgaggccggtgctgagtcg 496

                                                                       
Query: 291 actcggtgactcggagcgggtggtggtgaggaagcggcatgaggtggtggtgcagctctc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actcggtgactcggagcgggtggtggtgaggaagcggcatgaggtggtggtgcagctctc 436

                                                                       
Query: 351 gctgtctctgttttgcgtcgacagctatgagaggctcgcggcggcggcggcggggggagg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gctgtctctgttttgcgtcgacagctatgagaggctcgcggcggcggcggcggggggagg 376

                                                                       
Query: 411 aaaggttgccagcgacgcgtccgcatcgtccctcatgttcctctgcaaccccatcaatgt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaggttgccagcgacgcgtccgcatcgtccctcatgttcctctgcaaccccatcaatgt 316

                   
Query: 471 ttcattct 478
           ||||||||
Sbjct: 315 ttcattct 308