Miyakogusa Predicted Gene

Lj2g3v3303460.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3303460.1 tr|F4K694|F4K694_ARATH RPM1-interacting protein 4
(RIN4) family protein OS=Arabidopsis thaliana
GN=N,67.53,2e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.39956.1
         (237 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62870 similar to UniRef100_A7Q2Y2 Cluster: Chromosome...    94   4e-19
gnl|LJGI|BW598477 homologue to UniRef100_O22633 Cluster: NOI pro...    70   6e-12

>gnl|LJGI|TC62870 similar to UniRef100_A7Q2Y2 Cluster: Chromosome chr12 scaffold_47,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_47, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (38%)
          Length = 779

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtcggataaggatcggccactacccaagtttggtgaatgggatgtcaatgatccagcttc 65
           |||||| |||| ||| |||||||| || |||||||||||||||||||||||||| || ||
Sbjct: 219 gtcggacaagggtcgtccactaccaaaatttggtgaatgggatgtcaatgatccggcctc 278

                                                              
Query: 66  tgctgaaggttacacggtgatttttaacaaagctagggatgagaaaaagac 116
           |||||| || | ||| |||||||| || || || |||||||| ||||||||
Sbjct: 279 tgctgaggggttcacagtgattttcaataaggccagggatgaaaaaaagac 329


>gnl|LJGI|BW598477 homologue to UniRef100_O22633 Cluster: NOI protein; n=1;
           Arabidopsis thaliana|Rep: NOI protein - Arabidopsis
           thaliana (Mouse-ear cress), partial (51%)
          Length = 467

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                       
Query: 22  ccactacccaagtttggtgaatgggatgtcaatgatccagcttctgctgaaggttacacg 81
           |||||||| || |||||||||||||||||||||||||| || |||||||| ||   ||| 
Sbjct: 60  ccactaccaaaatttggtgaatgggatgtcaatgatcccgcctctgctgaggggatcaca 119

                                              
Query: 82  gtgatttttaacaaagctagggatgagaaaaagac 116
           |||||||| || || || | |||||| ||||||||
Sbjct: 120 gtgattttcaataacgccacggatgaaaaaaagac 154