Miyakogusa Predicted Gene

Lj2g3v3261210.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3261210.1 Non Chatacterized Hit- tr|K4CBI5|K4CBI5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,66.67,0.0004,
,FS356137.path2.1
         (260 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS356137 weakly similar to UniRef100_A7Q6K4 Cluster: Ch...   500   e-141
gnl|LJGI|TC72246 homologue to UniRef100_A7QS17 Cluster: Chromoso...    70   7e-12

>gnl|LJGI|FS356137 weakly similar to UniRef100_A7Q6K4 Cluster: Chromosome chr11
           scaffold_56, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr11 scaffold_56, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (7%)
          Length = 537

 Score =  500 bits (252), Expect = e-141
 Identities = 258/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctagatagcccacgaggctctgtggaaacaataacaaagtatatggttaatggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atgctagatagcccacgaggctctgtggaaacaataacaaagtatatggttaatggttct 247

                                                                       
Query: 61  ttgagaaatgacatgcagagaaatgataggttatgtgtttatgtatttatcataaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttgagaaatgacatgcagagaaatgataggttatgtgtttatgtatttatcataaaatct 187

                                                                       
Query: 121 ttctcccttaaattaaagacacgccagggggacctgccattgctgcaaggtccattaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttctcccttaaattaaagacacgccagggggacctgccattgctgcaaggtccattaaaa 127

                                                                       
Query: 181 gtgtgcatctctgtttatcaaggtcacatgggtgtgtcatatgccttatatgccatgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtgtgcatctctgtttatcaaggtcacatgggtgtgtcatatgccttatatgccatgtta 67

                               
Query: 241 atgcaaagaaacaattaatt 260
           ||||||| | ||||||||||
Sbjct: 66  atgcaaatatacaattaatt 47


>gnl|LJGI|TC72246 homologue to UniRef100_A7QS17 Cluster: Chromosome undetermined
           scaffold_155, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_155,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (24%)
          Length = 1626

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaggctctgtggaaacaataacaaagtatatggttaatggttctttgagaaatgacatgc 76
           |||||||||||| |||| ||||| |||| ||||||||||||||| ||||||||| | |||
Sbjct: 674 gaggctctgtggcaacagtaacagagtacatggttaatggttctctgagaaatgccttgc 733

              
Query: 77  aga 79
           |||
Sbjct: 734 aga 736