Miyakogusa Predicted Gene

Lj2g3v3261190.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3261190.1 CUFF.39943.1
         (1251 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BI420048 UniRef100_Q0EEA3 Cluster: Major surface antige...   912   0.0  

>gnl|LJGI|BI420048 UniRef100_Q0EEA3 Cluster: Major surface antigen; n=1; Hepatitis B
           virus|Rep: Major surface antigen - Hepatitis B virus
           (HBV), partial (8%)
          Length = 584

 Score =  912 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaccgtgtacccaaaaccgaacccgggtcatccccattcatacccgggtcatcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atggaccgtgtacccaaaaccgaacccgggtcatccccattcatacccgggtcatcccca 184

                                                                       
Query: 61  cccgttttcgcttctaccagccccagaaacctcagagacatgagcgtttcggagctggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cccgttttcgcttctaccagccccagaaacctcagagacatgagcgtttcggagctggtt 244

                                                                       
Query: 121 gcggtgttgcgccctgcgtttcgggcggaggattatgataaggtcgaggaggttctggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcggtgttgcgccctgcgtttcgggcggaggattatgataaggtcgaggaggttctggag 304

                                                                       
Query: 181 agcaagtacgagaagctccaagggcaggttgagatggagaggctggaaaggatgcatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaagtacgagaagctccaagggcaggttgagatggagaggctggaaaggatgcatctt 364

                                                                       
Query: 241 gaggaacagttgaggcagagaaatgaagagtttgataaagggaagaatgaaaaggaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaggaacagttgaggcagagaaatgaagagtttgataaagggaagaatgaaaaggaaaat 424

                                                                       
Query: 301 tatgaaatgttgttgaagattatgaaggaagctggtggattggctagtggtggtagtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tatgaaatgttgttgaagattatgaaggaagctggtggattggctagtggtggtagtgat 484

                                                                       
Query: 361 tctcattgtattgatgagatgaagaagaagattggtgagttagaggctgagaattttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctcattgtattgatgagatgaagaagaagattggtgagttagaggctgagaattttgaa 544

                                                   
Query: 421 ttgaaagagatgaagaaaaagttggtggatgatgttgtag 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttgaaagagatgaagaaaaagttggtggatgatgttgtag 584