Miyakogusa Predicted Gene
- Lj2g3v3260050.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3260050.1 Non Chatacterized Hit- tr|A9P1T0|A9P1T0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.74,0.000000000000002,RNA recognition motif,RNA recognition motif
domain; RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAME,NODE_45338_length_580_cov_92.408623.path2.1
(456 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69459 weakly similar to UniRef100_A7PXT7 Cluster: Chr... 716 0.0
gnl|LJGI|TC81994 similar to UniRef100_Q2HTC3 Cluster: RNA-bindin... 78 5e-14
gnl|LJGI|TC62000 weakly similar to UniRef100_A7PXT7 Cluster: Chr... 78 5e-14
>gnl|LJGI|TC69459 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (66%)
Length = 1129
Score = 716 bits (361), Expect = 0.0
Identities = 367/369 (99%)
Strand = Plus / Plus
Query: 1 atgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgcccagagcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgcccagagcggt 370
Query: 61 gaaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaaatgcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaaatgcagtt 430
Query: 121 tctgcattggatggattggatgttggtgggcgagaaatgcgggttagattttctgttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctgcattggatggattggatgttggtgggcgagaaatgcgggttagattttctgttgag 490
Query: 181 gtgaatcctagggggaggaatcttgagacgatgaactcgtcacccagaagaactatatac 240
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 491 gtgaatcctagggggaggaatcttgaggcgatgaactcgtcgcccagaagaactatatac 550
Query: 241 tatgaagctcctcataagctgtatgttgggaatcttgccatgtctgctacacctgaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tatgaagctcctcataagctgtatgttgggaatcttgccatgtctgctacacctgaagac 610
Query: 301 gtgagatatctttttgctagatttggtaatgtggccagtgtgaggctcttgcaagatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtgagatatctttttgctagatttggtaatgtggccagtgtgaggctcttgcaagatttg 670
Query: 361 aaacaaggc 369
|||||||||
Sbjct: 671 aaacaaggc 679
Score = 170 bits (86), Expect = 5e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 371 cttatctttctgagagagagcgtgatgcagcaatgtccctcaatggaactgaattttgtg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttatctttctgagagagagcgtgatgcagcaatgtccctcaatggaactgaattttgtg 764
Query: 431 gtcgtaaaattgtggttagacaaggt 456
||||||||||||||||||||||||||
Sbjct: 765 gtcgtaaaattgtggttagacaaggt 790
>gnl|LJGI|TC81994 similar to UniRef100_Q2HTC3 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (24%)
Length = 406
Score = 77.8 bits (39), Expect = 5e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 atgttcaggcctcacggaaccattatatctgccgaggtt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgttcaggcctcacggaaccattatatctgccgaggtt 399
>gnl|LJGI|TC62000 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (57%)
Length = 1322
Score = 77.8 bits (39), Expect = 5e-14
Identities = 144/179 (80%)
Strand = Plus / Plus
Query: 2 tgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgcccagagcggtg 61
|||||| |||| | |||||||||||||||| ||||||| | | |||| ||| ||||
Sbjct: 413 tgttcaagccttatggaaccattatatctgttgaggtttccagaaatgctgagactggtg 472
Query: 62 aaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaaatgcagttt 121
|||||| || |||| |||||||| |||| ||| || ||| ||||||| |||| ||
Sbjct: 473 aaagtaggggatgtggttatgtcataatggaatccataaactcagcaaaaagtgcaattg 532
Query: 122 ctgcattggatggattggatgttggtgggcgagaaatgcgggttagattttctgttgag 180
||||||||||||||| |||||||| ||||| ||| ||||||||| |||||| ||||||
Sbjct: 533 ctgcattggatggatcagatgttggggggcgcgaattgcgggttaaattttcagttgag 591
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 391 cgtgatgcagcaatgtccctcaatggaactgaattttgtggtcgta 436
||||||||||||||||| || |||||||| ||||||| ||| ||||
Sbjct: 837 cgtgatgcagcaatgtctcttaatggaacagaattttatggccgta 882