Miyakogusa Predicted Gene
- Lj2g3v3234600.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3234600.3 Non Chatacterized Hit- tr|F6HZN8|F6HZN8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.57,0.0000000000003,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RNA recognition motif,CUFF.39940.3
(693 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64666 similar to UniRef100_A7R1X0 Cluster: Chromosome... 408 e-113
gnl|LJGI|TC62255 similar to UniRef100_A7R1X0 Cluster: Chromosome... 363 e-99
gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome... 147 1e-34
gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosom... 127 1e-28
>gnl|LJGI|TC64666 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 753
Score = 408 bits (206), Expect = e-113
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 1 atgcgagatcgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atgcgagatcgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcct 607
Query: 61 gctgttgctgagagagtcattgtggataagcacataattgatggccgaactgttgaagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gctgttgctgagagagtcattgtggataagcacataattgatggccgaactgttgaagcc 667
Query: 121 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtggcgtccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtggcgtccat 727
Query: 181 ggatctcccggtaccggacgcaccaa 206
||||||||||||||||||||||||||
Sbjct: 728 ggatctcccggtaccggacgcaccaa 753
>gnl|LJGI|TC62255 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 791
Score = 363 bits (183), Expect = e-99
Identities = 241/255 (94%), Gaps = 4/255 (1%)
Strand = Plus / Plus
Query: 1 atgcgagatcgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcct 60
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 541 atgcgagatcgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcct 600
Query: 61 gctgttgctgagagagtcattgtggataagcacataattgatggccgaactgttgaagcc 120
|||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 601 gctgttgcagaacgagtcattgtggataagcacataattgatggccgaacggttgaagcc 660
Query: 121 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtggcgtccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 661 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtagcgtccat 720
Query: 181 ggatctcccggtaccggacgcaccaagaagatttttgttggaggcttgccatcaacaatc 240
|||||||| ||| ||||||||| ||||||||||||||||||| |||| || || ||||||
Sbjct: 721 ggatctcctggtcccggacgca-caagaagatttttgttgga-gcttacc-tc-acaatc 776
Query: 241 acagaaagtgatttt 255
|||||||||||||||
Sbjct: 777 acagaaagtgatttt 791
>gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (58%)
Length = 2146
Score = 147 bits (74), Expect = 1e-34
Identities = 200/242 (82%)
Strand = Plus / Plus
Query: 199 cgcaccaagaagatttttgttggaggcttgccatcaacaatcacagaaagtgattttaag 258
||||| |||||||| ||||||||||| | ||||| ||||| || || ||||||||||||
Sbjct: 442 cgcacaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaag 501
Query: 259 aactattttgatcagtttggtacaattaccgatgttgtagtaatgtatgaccacaacacc 318
||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct: 502 aactactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacaca 561
Query: 319 cagagaccaagaggttttggcttcatcacttatgattcagaagaagctgtagacagagtt 378
|| || || ||||||||||| ||||| || | |||||| || |||| || || | ||||
Sbjct: 562 caaaggcctagaggttttggattcataacctttgattctgaggaaggagttgagaaagtt 621
Query: 379 ctttttaagacatttcatgaactcaacggaaagatggttgaggtcaagcgagcagttccc 438
|| | || || ||||||||||| || || || ||||||||||| ||| |||| ||||||
Sbjct: 622 ctgtacaaaacttttcatgaactgaatggtaaaatggttgaggttaagagagctgttccc 681
Query: 439 aa 440
||
Sbjct: 682 aa 683
Score = 69.9 bits (35), Expect = 2e-11
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 7 gatcgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcctgctgtt 66
|||||| |||| || ||||| || || || || |||||||| ||||| |||||| |||||
Sbjct: 244 gatcgcaccacggggcgtgcccgtggttttggatttgttgtttttgccgatccttctgtt 303
Query: 67 gctgagagagtcattgtggataagcacataattgatggccgaactgttgaagccaagaag 126
|||||| |||| || |||| ||||| | |||||||| ||||||| ||||| || |||
Sbjct: 304 gctgagcgagttgttatggaaaagcatgtcattgatggtagaactgtggaagcaaaaaag 363
Query: 127 gctgttcctcgggatgatcagaa 149
||||| ||| | |||||||||||
Sbjct: 364 gctgtccctagagatgatcagaa 386
>gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (33%)
Length = 622
Score = 127 bits (64), Expect = 1e-28
Identities = 121/140 (86%)
Strand = Plus / Plus
Query: 199 cgcaccaagaagatttttgttggaggcttgccatcaacaatcacagaaagtgattttaag 258
||||| |||||||| ||||||||||| | ||||| ||||| || || ||||||||||||
Sbjct: 482 cgcacaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaag 541
Query: 259 aactattttgatcagtttggtacaattaccgatgttgtagtaatgtatgaccacaacacc 318
||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct: 542 aactactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacaca 601
Query: 319 cagagaccaagaggttttgg 338
|| || || |||||||||||
Sbjct: 602 caaaggcctagaggttttgg 621
Score = 69.9 bits (35), Expect = 2e-11
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 7 gatcgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcctgctgtt 66
|||||| |||| || ||||| || || || || |||||||| ||||| |||||| |||||
Sbjct: 284 gatcgcaccacggggcgtgcccgtggttttggatttgttgtttttgccgatccttctgtt 343
Query: 67 gctgagagagtcattgtggataagcacataattgatggccgaactgttgaagccaagaag 126
|||||| |||| || |||| ||||| | |||||||| ||||||| ||||| || |||
Sbjct: 344 gctgagcgagttgttatggaaaagcatgtcattgatggtagaactgtggaagcaaaaaag 403
Query: 127 gctgttcctcgggatgatcagaa 149
||||| ||| | |||||||||||
Sbjct: 404 gctgtccctagagatgatcagaa 426