Miyakogusa Predicted Gene
- Lj2g3v3234600.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3234600.2 Non Chatacterized Hit- tr|F6HZN8|F6HZN8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.57,0.0000000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; RRM,RNA recognition motif domain; RNA recognition
m,CUFF.39940.2
(1338 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81664 weakly similar to UniRef100_A7P0F4 Cluster: Chr... 1304 0.0
gnl|LJGI|TC68250 weakly similar to UniRef100_A7P0F4 Cluster: Chr... 819 0.0
gnl|LJGI|TC62255 similar to UniRef100_A7R1X0 Cluster: Chromosome... 442 e-123
gnl|LJGI|TC64666 similar to UniRef100_A7R1X0 Cluster: Chromosome... 337 1e-91
gnl|LJGI|FS348503 similar to UniRef100_A7Q348 Cluster: Chromosom... 176 2e-43
gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome... 147 2e-34
gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosom... 127 2e-28
gnl|LJGI|TC73957 weakly similar to UniRef100_A7Q348 Cluster: Chr... 72 1e-11
gnl|LJGI|TC80543 similar to UniRef100_A7P0F4 Cluster: Chromosome... 62 9e-09
>gnl|LJGI|TC81664 weakly similar to UniRef100_A7P0F4 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (28%)
Length = 1090
Score = 1304 bits (658), Expect = 0.0
Identities = 664/666 (99%)
Strand = Plus / Plus
Query: 673 ggattgaatttgaacccaagctatggaggaacttccaattatgggggtaatctaggatac 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattgaatttgaacccaagctatggaggaacttccaattatgggggtaatctaggatac 60
Query: 733 agtcggataagtcctttctacaacagcaactctagcagatataccactcctatcggctac 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtcggataagtcctttctacaacagcaactctagcagatataccactcctatcggctac 120
Query: 793 agcgggggcaatgtgagaagtgattcgcttatgaactctccttctcggaatgtttgggga 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcgggggcaatgtgagaagtgattcgcttatgaactctccttctcggaatgtttgggga 180
Query: 853 aatggggatctaaatagtacttccaataaccaagccagccctggtggtgcttacttggga 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatggggatctaaatagtacttccaataaccaagccagccctggtggtgcttacttggga 240
Query: 913 tctggaagtggggcttttggagtttcaattggaaatagcggcgcgagttggggtcaatct 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctggaagtggggcttttggagtttcaattggaaatagcggcgcgagttggggtcaatct 300
Query: 973 gttccaaaccaaggtggaggggctgcttccagctataatgcttggaataatgcttatgaa 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttccaaaccaaggtggaggggctgcttccagctataatgcttggaataatgcttatgaa 360
Query: 1033 ggtggaggtagcagcattggattaggagggggagggtatggaaggaacagcccaagcgtg 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtggaggtagcagcattggattaggagggggagggtatggaaggaacagcccaagcgtg 420
Query: 1093 cctcaatcctcaacatttactgcaccaactggcggttatgaaggatcctatggggacttg 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctcaatcctcaacatttactgcaccaactggcggttatgaaggatcctatggggacttg 480
Query: 1153 taccgcaatggttcattttacagtgactcaacttggcggtccggtgcttctgaaattgat 1212
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caccgcaatggttcattttacagtgactcaacttggcggtccggtgcttctgaaattgat 540
Query: 1213 ggctcgggttcgtttggttatggacttggtggtatagcttcagaagatctagtgaagagt 1272
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 541 ggctcgggttcgtttggttatggacttggtggtacagcttcagaagatctagtgaagagt 600
Query: 1273 tcagatgatttgaatggaaactacaatgtagcaagtagacaatctaatagaggtattgct 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcagatgatttgaatggaaactacaatgtagcaagtagacaatctaatagaggtattgct 660
Query: 1333 gcttag 1338
||||||
Sbjct: 661 gcttag 666
>gnl|LJGI|TC68250 weakly similar to UniRef100_A7P0F4 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 1047
Score = 819 bits (413), Expect = 0.0
Identities = 420/421 (99%), Gaps = 1/421 (0%)
Strand = Plus / Plus
Query: 918 aagtggggcttttggagtttcaattggaaatagcggcgcgagttggggtcaatctgttcc 977
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtggggcttt-ggagtttcaattggaaatagcggcgcgagttggggtcaatctgttcc 59
Query: 978 aaaccaaggtggaggggctgcttccagctataatgcttggaataatgcttatgaaggtgg 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aaaccaaggtggaggggctgcttccagctataatgcttggaataatgcttatgaaggtgg 119
Query: 1038 aggtagcagcattggattaggagggggagggtatggaaggaacagcccaagcgtgcctca 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aggtagcagcattggattaggagggggagggtatggaaggaacagcccaagcgtgcctca 179
Query: 1098 atcctcaacatttactgcaccaactggcggttatgaaggatcctatggggacttgtaccg 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atcctcaacatttactgcaccaactggcggttatgaaggatcctatggggacttgtaccg 239
Query: 1158 caatggttcattttacagtgactcaacttggcggtccggtgcttctgaaattgatggctc 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 caatggttcattttacagtgactcaacttggcggtccggtgcttctgaaattgatggctc 299
Query: 1218 gggttcgtttggttatggacttggtggtatagcttcagaagatctagtgaagagttcaga 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gggttcgtttggttatggacttggtggtatagcttcagaagatctagtgaagagttcaga 359
Query: 1278 tgatttgaatggaaactacaatgtagcaagtagacaatctaatagaggtattgctgctta 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgatttgaatggaaactacaatgtagcaagtagacaatctaatagaggtattgctgctta 419
Query: 1338 g 1338
|
Sbjct: 420 g 420
>gnl|LJGI|TC62255 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 791
Score = 442 bits (223), Expect = e-123
Identities = 251/255 (98%), Gaps = 4/255 (1%)
Strand = Plus / Plus
Query: 1 atgcgagatcgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgcgagatcgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcct 600
Query: 61 gctgttgcagaacgagtcattgtggataagcacataattgatggccgaacggttgaagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctgttgcagaacgagtcattgtggataagcacataattgatggccgaacggttgaagcc 660
Query: 121 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtagcgtccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtagcgtccat 720
Query: 181 ggatctcctggtcccggacgcaccaagaagatttttgttggaggcttaccctcaacaatc 240
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||
Sbjct: 721 ggatctcctggtcccggacgca-caagaagatttttgttgga-gctta-cctc-acaatc 776
Query: 241 acagaaagtgatttt 255
|||||||||||||||
Sbjct: 777 acagaaagtgatttt 791
>gnl|LJGI|TC64666 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 753
Score = 337 bits (170), Expect = 1e-91
Identities = 197/206 (95%)
Strand = Plus / Plus
Query: 1 atgcgagatcgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcct 60
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 548 atgcgagatcgcgccacaggccgtgctcgaggcttcggttttgttgtctttgctgatcct 607
Query: 61 gctgttgcagaacgagtcattgtggataagcacataattgatggccgaacggttgaagcc 120
|||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 608 gctgttgctgagagagtcattgtggataagcacataattgatggccgaactgttgaagcc 667
Query: 121 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtagcgtccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 668 aagaaggctgttcctcgggatgatcagaacaccttaaacagacagtccggtggcgtccat 727
Query: 181 ggatctcctggtcccggacgcaccaa 206
|||||||| ||| |||||||||||||
Sbjct: 728 ggatctcccggtaccggacgcaccaa 753
>gnl|LJGI|FS348503 similar to UniRef100_A7Q348 Cluster: Chromosome chr12 scaffold_47,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_47, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 419
Score = 176 bits (89), Expect = 2e-43
Identities = 119/129 (92%)
Strand = Plus / Minus
Query: 1210 gatggctcgggttcgtttggttatggacttggtggtatagcttcagaagatctagtgaag 1269
|||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct: 413 gatggctcaggctcatttggctatggacttggtggtatagcttcagatgatctagtaaag 354
Query: 1270 agttcagatgatttgaatggaaactacaatgtagcaagtagacaatctaatagaggtatt 1329
||||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 353 agttcggatgatttgattggtaactacaatgtagcaagtagacaatttaatagaggtatt 294
Query: 1330 gctgcttag 1338
|||||||||
Sbjct: 293 gctgcttag 285
>gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (58%)
Length = 2146
Score = 147 bits (74), Expect = 2e-34
Identities = 200/242 (82%)
Strand = Plus / Plus
Query: 199 cgcaccaagaagatttttgttggaggcttaccctcaacaatcacagaaagtgattttaag 258
||||| |||||||| ||||||||||| |||| || ||||| || || ||||||||||||
Sbjct: 442 cgcacaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaag 501
Query: 259 aactattttgatcagtttggtacaattaccgatgttgtagtaatgtatgaccacaacacc 318
||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct: 502 aactactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacaca 561
Query: 319 cagagaccaagaggttttggcttcatcacttatgattcagaagaagctgtagacagagtt 378
|| || || ||||||||||| ||||| || | |||||| || |||| || || | ||||
Sbjct: 562 caaaggcctagaggttttggattcataacctttgattctgaggaaggagttgagaaagtt 621
Query: 379 ctttttaagacatttcatgaactcaacggaaagatggttgaggtcaagcgagcagttccc 438
|| | || || ||||||||||| || || || ||||||||||| ||| |||| ||||||
Sbjct: 622 ctgtacaaaacttttcatgaactgaatggtaaaatggttgaggttaagagagctgttccc 681
Query: 439 aa 440
||
Sbjct: 682 aa 683
Score = 69.9 bits (35), Expect = 4e-11
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 7 gatcgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcctgctgtt 66
||||||||||| || ||||| || || || || |||||||||||||| |||||| |||||
Sbjct: 244 gatcgcaccacggggcgtgcccgtggttttggatttgttgtttttgccgatccttctgtt 303
Query: 67 gcagaacgagtcattgtggataagcacataattgatggccgaacggttgaagccaagaag 126
|| || ||||| || |||| ||||| | |||||||| |||| || ||||| || |||
Sbjct: 304 gctgagcgagttgttatggaaaagcatgtcattgatggtagaactgtggaagcaaaaaag 363
Query: 127 gctgttcctcgggatgatcagaa 149
||||| ||| | |||||||||||
Sbjct: 364 gctgtccctagagatgatcagaa 386
>gnl|LJGI|FS339207 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
scaffold_383, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_383,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (33%)
Length = 622
Score = 127 bits (64), Expect = 2e-28
Identities = 121/140 (86%)
Strand = Plus / Plus
Query: 199 cgcaccaagaagatttttgttggaggcttaccctcaacaatcacagaaagtgattttaag 258
||||| |||||||| ||||||||||| |||| || ||||| || || ||||||||||||
Sbjct: 482 cgcacaaagaagatatttgttggaggtctaccatccacaattactgagagtgattttaag 541
Query: 259 aactattttgatcagtttggtacaattaccgatgttgtagtaatgtatgaccacaacacc 318
||||| |||||||||||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct: 542 aactactttgatcagtttggaacaattacagatgttgtcgtgatgtatgaccataacaca 601
Query: 319 cagagaccaagaggttttgg 338
|| || || |||||||||||
Sbjct: 602 caaaggcctagaggttttgg 621
Score = 69.9 bits (35), Expect = 4e-11
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 7 gatcgcaccacaggccgtgctcgaggcttcggttttgttgtttttgctgatcctgctgtt 66
||||||||||| || ||||| || || || || |||||||||||||| |||||| |||||
Sbjct: 284 gatcgcaccacggggcgtgcccgtggttttggatttgttgtttttgccgatccttctgtt 343
Query: 67 gcagaacgagtcattgtggataagcacataattgatggccgaacggttgaagccaagaag 126
|| || ||||| || |||| ||||| | |||||||| |||| || ||||| || |||
Sbjct: 344 gctgagcgagttgttatggaaaagcatgtcattgatggtagaactgtggaagcaaaaaag 403
Query: 127 gctgttcctcgggatgatcagaa 149
||||| ||| | |||||||||||
Sbjct: 404 gctgtccctagagatgatcagaa 426
>gnl|LJGI|TC73957 weakly similar to UniRef100_A7Q348 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 768
Score = 71.9 bits (36), Expect = 1e-11
Identities = 163/204 (79%), Gaps = 6/204 (2%)
Strand = Plus / Plus
Query: 1128 ttatgaaggatcctatggggactt-----gtaccgcaa-tggttcattttacagtgactc 1181
|||||||||||| ||||||||||| |||||| || ||||||| |||||| ||||||
Sbjct: 323 ttatgaaggatcatatggggacttataccgtaccggaagtggttcagtttacaatgactc 382
Query: 1182 aacttggcggtccggtgcttctgaaattgatggctcgggttcgtttggttatggacttgg 1241
|||||||| || | | ||||||| || |||| || | || |||||||||| |||||
Sbjct: 383 cacttggcgatctgctacttctgagatagatgattctagctcatttggttatgatcttgg 442
Query: 1242 tggtatagcttcagaagatctagtgaagagttcagatgatttgaatggaaactacaatgt 1301
|||||||| ||| | || | ||| |||| ||| || | || | |||||||||||||||
Sbjct: 443 tggtatagagtcaaatgacccagtaaagaattctgagggttatattggaaactacaatgt 502
Query: 1302 agcaagtagacaatctaatagagg 1325
||||||||||||||||||||||
Sbjct: 503 tacaagtagacaatctaatagagg 526
>gnl|LJGI|TC80543 similar to UniRef100_A7P0F4 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 713
Score = 61.9 bits (31), Expect = 9e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1287 tggaaactacaatgtagcaagtagacaatctaatagagg 1325
||||||||||||||| ||||||||||||||||||||||
Sbjct: 83 tggaaactacaatgttacaagtagacaatctaatagagg 121