Miyakogusa Predicted Gene
- Lj2g3v3209580.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3209580.2 Non Chatacterized Hit- tr|B4FN51|B4FN51_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,71.01,3e-19,GrpE,GrpE
nucleotide exchange factor; GRPE PROTEIN, MITOCHONDRIAL,NULL; GRPE
PROTEIN,GrpE nucleotide,CUFF.39870.2
(576 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS322425 similar to UniRef100_A7P0J9 Cluster: Chromosom... 1100 0.0
gnl|LJGI|DC594403 674 0.0
gnl|LJGI|TC62155 similar to UniRef100_Q9SZ18 Cluster: GrpE like ... 127 8e-29
>gnl|LJGI|FS322425 similar to UniRef100_A7P0J9 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (35%)
Length = 766
Score = 1100 bits (555), Expect = 0.0
Identities = 569/576 (98%)
Strand = Plus / Plus
Query: 1 atgttcgtcaataagcttctaacccgtatctccagaaccgtttccagaacctcccttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atgttcgtcaataagcttctaacccgtatctccagaaccgtttccagaacctcccttctc 162
Query: 61 tctgcttcgcaaagaccccaacaattccattccctccttccccaatcacccaacaagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tctgcttcgcaaagaccccaacaattccattccctccttccccaatcacccaacaagctg 222
Query: 121 atttcagctcaagcaaatttgttatgtccaacaataagttccttaactccaagatttgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atttcagctcaagcaaatttgttatgtccaacaataagttccttaactccaagatttgga 282
Query: 181 ttttcttcatcacccacaactgaaactaatgaaaaagaaaaagagaaccatcagcataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttttcttcatcacccacaactgaaactaatgaaaaagaaaaagagaaccatcagcataat 342
Query: 241 ggcagttcttcaactgatgacccaataaaaacaagtgaagaggccaagaaagttgatcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggcagttcttcaactgatgacccaataaaaacaagtgaagaggccaagaaagttgatcag 402
Query: 301 gatggacaagctaagcctgtagatgaaacaacagaatcagattcagatttcgattcagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gatggacaagctaagcctgtagatgaaacaacagaatcagattcagatttcgattcagag 462
Query: 361 agtgaatgtgatctttccagggaagatttaattaagcttgtgtctgagaaggaagaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtgaatgtgatctttccagggaagatttaattaagcttgtgtctgagaaggaagaactt 522
Query: 421 ttgaagttaaagcacaaagatattgagaaaatgcacgataaagttctgcgtacttatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttgaagttaaagcacaaagatattgagaaaatgcacgataaagttctgcgtacttatgca 582
Query: 481 gagatggagaatatcaaggacaggactagacgtgaagcagagaattcnnnnnnntttgct 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 583 gagatggagaatatcaaggacaggactagacgtgaagcagagaattcaaaaaaatttgct 642
Query: 541 atacagaattttgcaaagagcttactagatgttgcg 576
||||||||||||||||||||||||||||||||||||
Sbjct: 643 atacagaattttgcaaagagcttactagatgttgcg 678
>gnl|LJGI|DC594403
Length = 563
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 1 atgttcgtcaataagcttctaacccgtatctccagaaccgtttccagaacctcccttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atgttcgtcaataagcttctaacccgtatctccagaaccgtttccagaacctcccttctc 155
Query: 61 tctgcttcgcaaagaccccaacaattccattccctccttccccaatcacccaacaagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tctgcttcgcaaagaccccaacaattccattccctccttccccaatcacccaacaagctg 215
Query: 121 atttcagctcaagcaaatttgttatgtccaacaataagttccttaactccaagatttgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atttcagctcaagcaaatttgttatgtccaacaataagttccttaactccaagatttgga 275
Query: 181 ttttcttcatcacccacaactgaaactaatgaaaaagaaaaagagaaccatcagcataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttttcttcatcacccacaactgaaactaatgaaaaagaaaaagagaaccatcagcataat 335
Query: 241 ggcagttcttcaactgatgacccaataaaaacaagtgaagaggccaagaaagttgatcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggcagttcttcaactgatgacccaataaaaacaagtgaagaggccaagaaagttgatcag 395
Query: 301 gatggacaagctaagcctgtagatgaaacaacagaatcag 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gatggacaagctaagcctgtagatgaaacaacagaatcag 435
Score = 107 bits (54), Expect = 8e-23
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 337 tcagattcagatttcgattcagagagtgaatgtgatctttccagggaagattta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcagattcagatttcgattcagagagtgaatgtgatctttccagggaagattta 563
>gnl|LJGI|TC62155 similar to UniRef100_Q9SZ18 Cluster: GrpE like protein; n=1;
Arabidopsis thaliana|Rep: GrpE like protein -
Arabidopsis thaliana (Mouse-ear cress), partial (59%)
Length = 1321
Score = 127 bits (64), Expect = 8e-29
Identities = 182/223 (81%), Gaps = 3/223 (1%)
Strand = Plus / Plus
Query: 356 cagagagtgaatgtgat---ctttccagggaagatttaattaagcttgtgtctgagaagg 412
||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||
Sbjct: 440 cagagagtgaatgtgataatctatccagggatgatttaataaagcttgttgctgagaagg 499
Query: 413 aagaacttttgaagttaaagcacaaagatattgagaaaatgcacgataaagttctgcgta 472
||||||||||||||| ||||| |||| |||| | ||||| | | ||| ||| |||||
Sbjct: 500 aagaacttttgaagtcgaagcaggaagacattgtggaaatgaagggtaaggttatgcgtt 559
Query: 473 cttatgcagagatggagaatatcaaggacaggactagacgtgaagcagagaattcnnnnn 532
||||||| |||||||||||| | | |||||| ||||| || |||||||||||
Sbjct: 560 cttatgctgagatggagaatgttctgagcaggacaagacgcgatgcagagaattcgaaaa 619
Query: 533 nntttgctatacagaattttgcaaagagcttactagatgttgc 575
|||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 620 aatttgctatacagaattttgcgaagggtttactagatgttgc 662