Miyakogusa Predicted Gene
- Lj2g3v3188380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3188380.1 Non Chatacterized Hit- tr|D7MKV0|D7MKV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,28.87,0.000000000003,Ribonuclease III family,Ribonuclease III
domain; Double-stranded RNA binding motif,Double-stranded
R,CUFF.39849.1
(1020 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68682 weakly similar to UniRef100_A7P0L3 Cluster: Chr... 2014 0.0
gnl|LJGI|AV772833 similar to UniRef100_A7P0L3 Cluster: Chromosom... 515 e-145
>gnl|LJGI|TC68682 weakly similar to UniRef100_A7P0L3 Cluster: Chromosome chr19
scaffold_4, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (76%)
Length = 1272
Score = 2014 bits (1016), Expect = 0.0
Identities = 1019/1020 (99%)
Strand = Plus / Plus
Query: 1 atggaagcggcggtggtggcggtggaaaacatactccgttacagtttcaagaacaagaag 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 atggaagcggcggtggtagcggtggaaaacatactccgttacagtttcaagaacaagaag 118
Query: 61 cttctagaagaagccctcacccactcctccttcaccggcgccacctcctacgagcgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cttctagaagaagccctcacccactcctccttcaccggcgccacctcctacgagcgcctc 178
Query: 121 gagttcatcggcgaccccattctcggcctcgccatcagcaactacctctatctcgctaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gagttcatcggcgaccccattctcggcctcgccatcagcaactacctctatctcgctaac 238
Query: 181 ccttctcttgaccccggccagctctctctcctccgcgccgccaatgtcagcaccgagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccttctcttgaccccggccagctctctctcctccgcgccgccaatgtcagcaccgagaag 298
Query: 241 ctcgcccgcgtcgccattcgcagcggaatttaccgccatgtccgccacaacagcgttccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctcgcccgcgtcgccattcgcagcggaatttaccgccatgtccgccacaacagcgttccg 358
Query: 301 cttgtcgataaggttcgggagttcgtcgttgctattgctggtgaggaccgcactgtctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cttgtcgataaggttcgggagttcgtcgttgctattgctggtgaggaccgcactgtctgc 418
Query: 361 tatggtggaatcgtgaaggctcctaaggttcttgctgacattgttgagtctgtggctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tatggtggaatcgtgaaggctcctaaggttcttgctgacattgttgagtctgtggctgct 478
Query: 421 gctgtttacattgatcttggttttgatctccagaatttatgggtgataattagaggtctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gctgtttacattgatcttggttttgatctccagaatttatgggtgataattagaggtctt 538
Query: 481 ttggagccgatagtgacattggatgatctggaacataaccctcaaccggtgacaatgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttggagccgatagtgacattggatgatctggaacataaccctcaaccggtgacaatgctc 598
Query: 541 tttgagatctgccagaagaatgggaagcaggttgacatcaaatactggagggacagtgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttgagatctgccagaagaatgggaagcaggttgacatcaaatactggagggacagtgac 658
Query: 601 aaaagcattgccggtgtctttgttgatgggcaaattgttgcctctgcttcctctgatcag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaagcattgccggtgtctttgttgatgggcaaattgttgcctctgcttcctctgatcag 718
Query: 661 aaggacattgcaaagcttgatgctgccaaggttgccttgcataaactagcacatttagtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aaggacattgcaaagcttgatgctgccaaggttgccttgcataaactagcacatttagtg 778
Query: 721 ccttccagtacaatgacatttgacttttgtgcgagcattgacggcacctttgagattgac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ccttccagtacaatgacatttgacttttgtgcgagcattgacggcacctttgagattgac 838
Query: 781 gtcgccaaacacaggttacatgagctatgtgtgatgaaaaagtggtccaaaccagtatac 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gtcgccaaacacaggttacatgagctatgtgtgatgaaaaagtggtccaaaccagtatac 898
Query: 841 agcattaggaaagatgaaggccctcctcatgaaaagatatatctctgctcggttcagata 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 agcattaggaaagatgaaggccctcctcatgaaaagatatatctctgctcggttcagata 958
Query: 901 ccaaccaccccacatggtccactccaaatgtttggggaggaaaaatctcggttgaaagat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ccaaccaccccacatggtccactccaaatgtttggggaggaaaaatctcggttgaaagat 1018
Query: 961 gcagagaactctgcggcttccttcatgattagggcattacaagaacgtaacttcatataa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gcagagaactctgcggcttccttcatgattagggcattacaagaacgtaacttcatataa 1078
>gnl|LJGI|AV772833 similar to UniRef100_A7P0L3 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 474
Score = 515 bits (260), Expect = e-145
Identities = 354/380 (93%), Gaps = 4/380 (1%)
Strand = Plus / Minus
Query: 645 tgcttcctctgatcagaaggacattgcaaagcttgatgctgccaaggttgccttgcataa 704
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 474 tgcttcctctgatcagaaggacattgccaagcttgatgctgccaaggttgccttgcataa 415
Query: 705 actagcacatttagtgccttccagtacaatgacatttgacttttgtgcgagcattgacgg 764
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 414 actagcacatgtagtgccttcccgtaccatgacatttgacttttgtgcgagcattgacgg 355
Query: 765 cacctttgagattgacgtcgccaaacacaggttacatgagctatgtgtgatgaaaaagtg 824
|||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct: 354 cacctttgagattgacgtcgcccgacccaggcaccatgagctatgtgtgatgaaaaagtg 295
Query: 825 gtccaaaccagta-ta-cagcattaggaaagatgaaggccctcctcatgaaaagatatat 882
|||||| | ||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 294 gtccaaccacgtactaccagcattaggaaagatgaaggccctcctcatgcaaagatatat 235
Query: 883 ctctgctcggttcagataccaaccaccccacatgg-tccactccaaatgtttggggagga 941
|| ||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 234 ctatgctcggttcagataccaaccacccaccctggctccactcccaatgtttggggaggg 175
Query: 942 aaaatctcggttgaaagatgcagagaactctgcggcttccttcatgattagggcatta-c 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 174 aaaatctcggttgaaagatgcagagaactctgcggcttccttcatgattagggcatgacc 115
Query: 1001 aagaacgtaacttcatataa 1020
|||||||||||||||||||
Sbjct: 114 cagaacgtaacttcatataa 95