Miyakogusa Predicted Gene

Lj2g3v3184310.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3184310.1 tr|G4XE02|G4XE02_CRUWA Organelle transcript
processing 82 (Fragment) OS=Crucihimalaya wallichii
GN=o,25.47,3e-18,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR_2,Pentatricopeptide repeat;
PPR,P,CUFF.39840.1
         (2088 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC595045 weakly similar to UniRef100_A7NSQ1 Cluster: Ch...   402   e-111

>gnl|LJGI|DC595045 weakly similar to UniRef100_A7NSQ1 Cluster: Chromosome chr18
           scaffold_1, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (14%)
          Length = 446

 Score =  402 bits (203), Expect = e-111
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                       
Query: 198 cttccgtctctgctcctcccaccgcttcatcgttgaggcccgcaaggttgaatcccactt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cttccgtctctgctcctcccaccgcttcatcgttgaggcccgcaaggttgaatcccactt 303

                                                                       
Query: 258 gttaaccttctcccccaacccacccaccttcctcctcaaccgcgccattgaggcctttgc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttaaccttctcccccaacccacccaccttcctcctcaaccgcgccattgaggcctttgc 363

                                                                       
Query: 318 caaatgctcctgcctccgcgatgcacgggacgtgttcgacgaaatgccccacagagatgg 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaatgctcctgcctccgcgatgcacgggacgtgttcgacgaaatgccccacagagatgg 423

                                  
Query: 378 cggcacctggaacgccatgatca 400
           |||||||||||||||||||||||
Sbjct: 424 cggcacctggaacgccatgatca 446



 Score =  165 bits (83), Expect = 1e-39
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                       
Query: 120 gatcagaacaatcctcggctacctcaaagttggtcgcatccaaaaagccacatccattct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gatcagaacaatcctcggctacctcaaagttggtcgcatccaaaaagccacatccattct 198

                                  
Query: 180 cttcggctacccagaacccttcc 202
           |||||||||||||||||||||||
Sbjct: 199 cttcggctacccagaacccttcc 221



 Score = 87.7 bits (44), Expect = 3e-16
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                      
Query: 1  atgggtgcaggtgctagtgccgcttctgtactgaaccaagtcct 44
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 atgggtgcaggtgctagtgccgcttctgtactgaaccaagtcct 63