Miyakogusa Predicted Gene
- Lj2g3v3106340.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3106340.2 tr|C1MMR2|C1MMR2_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_3254,25.5,0.0000000000008,CROOKED NECK PROTEIN,NULL;
PRE-MRNA SPLICING FACTOR,NULL; TPR-like,NULL;
TPR_REGION,Tetratricopeptid,CUFF.39723.2
(1245 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66986 similar to UniRef100_Q8GTX9 Cluster: Cell cycle... 735 0.0
gnl|LJGI|FS318898 similar to UniRef100_A9RF36 Cluster: Predicted... 648 0.0
gnl|LJGI|TC76268 similar to UniRef100_Q8GTX9 Cluster: Cell cycle... 307 9e-83
gnl|LJGI|BP061158 similar to UniRef100_Q4SD16 Cluster: Chromosom... 264 1e-69
gnl|LJGI|TC80794 similar to UniRef100_Q8GTX9 Cluster: Cell cycle... 220 2e-56
gnl|LJGI|TC67970 similar to UniRef100_Q8GTX9 Cluster: Cell cycle... 220 2e-56
gnl|LJGI|FS343387 similar to UniRef100_Q8GTX9 Cluster: Cell cycl... 216 3e-55
gnl|LJGI|BW597024 similar to UniRef100_Q8GTX9 Cluster: Cell cycl... 216 3e-55
gnl|LJGI|FS344047 184 9e-46
gnl|LJGI|TC57937 similar to UniRef100_Q7SGD2 Cluster: Pre-mRNA-s... 145 8e-34
>gnl|LJGI|TC66986 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked
neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell
cycle control crn (Crooked neck) protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (44%)
Length = 1425
Score = 735 bits (371), Expect = 0.0
Identities = 384/387 (99%), Gaps = 1/387 (0%)
Strand = Plus / Plus
Query: 857 ccaatgttcctcctgctgaggagaagctgtattggcagcgatatatctatttgtggatta 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ccaatgttcctcctgctgaggagaagctgtattggcagcgatatatctatttgtggatta 147
Query: 917 attatgcactctatgaagagcttgatgctggagatgtggagcgaacaagagaagtataca 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 attatgcactctatgaagagcttgatgctggagatgtggagcgaacaagagaagtataca 207
Query: 977 aggagggtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctag 1036
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aggagtgtcttaacttgatacctcacaaaaaattctcatttgctaagatgtggcttctag 267
Query: 1037 cagcccaatttgaaatacgtcagctgaatctca-agggtgctcgtctaatattaggaaat 1095
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 268 cagcccaatttgaaatacgtcagctgaatctcacagggtgctcgtctaatattaggaaat 327
Query: 1096 gctattggaaaggctcctaaagataagatttttaagaagtatatagagatagaactgcag 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gctattggaaaggctcctaaagataagatttttaagaagtatatagagatagaactgcag 387
Query: 1156 cttggtaacattgatcgatgcagaaaattgtatgaaaaatatttggagtgggcgcctgaa 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttggtaacattgatcgatgcagaaaattgtatgaaaaatatttggagtgggcgcctgaa 447
Query: 1216 aattgctatgcttggagcaagtatgca 1242
|||||||||||||||||||||||||||
Sbjct: 448 aattgctatgcttggagcaagtatgca 474
Score = 58.0 bits (29), Expect = 1e-07
Identities = 36/37 (97%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 820 tatgattcctggtttgattatattaggttggaggaga 856
|||||||||||||| ||||||||||||||||||||||
Sbjct: 4 tatgattcctggtt-gattatattaggttggaggaga 39
>gnl|LJGI|FS318898 similar to UniRef100_A9RF36 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(24%)
Length = 776
Score = 648 bits (327), Expect = 0.0
Identities = 489/543 (90%)
Strand = Plus / Plus
Query: 1 atgtcttcgtcgagagaaggagacccgaatctgggttacctgacccgaaaagacacggag 60
|||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 234 atgtcttcatcgagagaaggagacccgaacctgggttacctgacccggaaggacacggag 293
Query: 61 gtcaaactccctcgcccgacccgagtcaagaacaaaacccccgctccgatccaaatcacc 120
|| || || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 294 gtgaagcttcctcgcccgacccgcgtcaagaacaaaacccccgctccgattcaaatcacc 353
Query: 121 gccgagcagatcctccgtgaagccagggagcggcaagaagcagaaatccgcccgccgaag 180
||||||||||| |||||||| || |||||||| || || || || || ||||| ||||||
Sbjct: 354 gccgagcagattctccgtgaggctagggagcgccaggaggcggagatacgcccaccgaag 413
Query: 181 ctcaaaatcaccgacccccacgagctcggcgagtatcgcctccgcaagcgtaaggagttc 240
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 414 ctgaaaatcaccgacccccacgagctcggcgagtatcgcctccgcaagcggaaggagttc 473
Query: 241 gaggacctcatccgccgtgtccgatggaacaccagcgtctggctcaagtacgcacagtgg 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 gaggacctgattcgccgtgtccgatggaacaccagcgtctggctcaagtacgcgcagtgg 533
Query: 301 gaagtctcccaaaacgacttcaaacgcgcgcgttccgtctgggaacgcgcgctcgaagtc 360
|| ||||| ||||||||||||||||| |||||||| || ||||| |||||||| || ||
Sbjct: 534 gaggtctcgcaaaacgacttcaaacgtgcgcgttctgtttgggagcgcgcgctggaggtg 593
Query: 361 gattacaagaatcatacgctctggttgaagtatgcagaagtggagatgaagaacaagttc 420
||||||||||| || ||||| ||| |||||||||| || |||||||||||||||||||||
Sbjct: 594 gattacaagaaccacacgctgtggctgaagtatgcggaggtggagatgaagaacaagttc 653
Query: 421 atcaaccatgctaggaacgtttgggatcgtgccgttacgcttttgccgcgaatcgaccag 480
||||||||||| ||||| || |||||||| ||||| ||||| |||||| |||| ||||||
Sbjct: 654 atcaaccatgcgaggaatgtgtgggatcgcgccgtcacgctgttgccgagaattgaccag 713
Query: 481 ctctggtataagtacattcacatggaggagatgctggggaatgtggctggggggaggcag 540
|||||||||||||| |||||||||||||||||| |||| ||||| ||||| | | |||||
Sbjct: 714 ctctggtataagtatattcacatggaggagatgatgggcaatgtagctggcgcgcggcag 773
Query: 541 gtt 543
|||
Sbjct: 774 gtt 776
>gnl|LJGI|TC76268 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked
neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell
cycle control crn (Crooked neck) protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (13%)
Length = 521
Score = 307 bits (155), Expect = 9e-83
Identities = 170/175 (97%)
Strand = Plus / Plus
Query: 1071 gggtgctcgtctaatattaggaaatgctattggaaaggctcctaaagataagatttttaa 1130
|||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gggtgctcatgtaatattaggaactgctattggaaaggctcctaaagataagattcttaa 60
Query: 1131 gaagtatatagagatagaactgcagcttggtaacattgatcgatgcagaaaattgtatga 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagtatatagagatagaactgcagcttggtaacattgatcgatgcagaaaattgtatga 120
Query: 1191 aaaatatttggagtgggcgcctgaaaattgctatgcttggagcaagtatgcataa 1245
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatatttggagtgggcgcttgaaaattgctatgcttggagcaagtatgcataa 175
>gnl|LJGI|BP061158 similar to UniRef100_Q4SD16 Cluster: Chromosome 14 SCAF14645, whole
genome shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 14 SCAF14645, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer), partial (7%)
Length = 293
Score = 264 bits (133), Expect = 1e-69
Identities = 196/212 (92%), Gaps = 5/212 (2%)
Strand = Plus / Plus
Query: 857 ccaatgttcctcctgctgaggagaagctgtattggcagcgatatatctatttgtggatta 916
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 23 ccaatgttcctcctgcggaggagaagcggtactggcagcgatatatctatttgtggatta 82
Query: 917 attatgcactctatgaagagcttgatgctggagatgtggagcgaacaagagaagtataca 976
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 83 attatgcactctatgaagagcttgatgctggagatgtggagcgaacaagagatgtataca 142
Query: 977 -aggagggtcttaacatgatacctcacaaaaaat-tctcatttgctaagatgtggcttct 1034
||||| |||||||| | |||||||||||||| | |||| || || ||||||||||||||
Sbjct: 143 naggagtgtcttaacttaatacctcacaaaaagtntctcgttcgcgaagatgtggcttct 202
Query: 1035 agcagccca-atttgaa--atacgtcagctga 1063
||||||||| ||||||| |||||||||||||
Sbjct: 203 agcagcccacatttgaacnatacgtcagctga 234
>gnl|LJGI|TC80794 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked
neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell
cycle control crn (Crooked neck) protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 747
Score = 220 bits (111), Expect = 2e-56
Identities = 136/143 (95%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 983 gtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctagcagccc 1042
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 304 gtcttaacttgatacctcacaaaa-attctcattcgctaagatgtggcttctagcagccc 362
Query: 1043 aatttgaaatacgtcagctgaatctcaagggtgctcgtctaatattaggaaatgctattg 1102
|||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 363 aatttgaaatacgtcaactgaatctcaaggatgctcgtgtaatattaggaaatgatattg 422
Query: 1103 gaaaggctcctaaagataagatt 1125
|||||||||||||||||||||||
Sbjct: 423 gaaaggctcctaaagataagatt 445
>gnl|LJGI|TC67970 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked
neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell
cycle control crn (Crooked neck) protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 860
Score = 220 bits (111), Expect = 2e-56
Identities = 136/143 (95%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 983 gtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctagcagccc 1042
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 657 gtcttaacttgatacctcacaaaa-attctcattcgctaagatgtggcttctagcagccc 715
Query: 1043 aatttgaaatacgtcagctgaatctcaagggtgctcgtctaatattaggaaatgctattg 1102
|||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 716 aatttgaaatacgtcaactgaatctcaaggatgctcgtgtaatattaggaaatgatattg 775
Query: 1103 gaaaggctcctaaagataagatt 1125
|||||||||||||||||||||||
Sbjct: 776 gaaaggctcctaaagataagatt 798
>gnl|LJGI|FS343387 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked
neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell
cycle control crn (Crooked neck) protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 701
Score = 216 bits (109), Expect = 3e-55
Identities = 137/145 (94%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 978 ggagggtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctagc 1037
|||| |||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct: 377 ggagtgtcttaacttgatacctcacaaaa-attctcattcgctaggatgtggcttctagc 435
Query: 1038 agcccaatttgaaatacgtcagctgaatctcaagggtgctcgtctaatattaggaaatgc 1097
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 436 agcccaatttgaaatacgtcaattgaatctcaagggtgctcgtgtaatattaggaaatgc 495
Query: 1098 tattggaaaggctcctaaagataag 1122
|||||||||||||||||||||||||
Sbjct: 496 tattggaaaggctcctaaagataag 520
>gnl|LJGI|BW597024 similar to UniRef100_Q8GTX9 Cluster: Cell cycle control crn (Crooked
neck) protein-like; n=1; Arabidopsis thaliana|Rep: Cell
cycle control crn (Crooked neck) protein-like -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 483
Score = 216 bits (109), Expect = 3e-55
Identities = 137/145 (94%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 978 ggagggtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctagc 1037
|||| |||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct: 244 ggagtgtcttaacttgatacctcacaaaa-attctcattcgctaggatgtggcttctagc 302
Query: 1038 agcccaatttgaaatacgtcagctgaatctcaagggtgctcgtctaatattaggaaatgc 1097
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 303 agcccaatttgaaatacgtcaattgaatctcaagggtgctcgtgtaatattaggaaatgc 362
Query: 1098 tattggaaaggctcctaaagataag 1122
|||||||||||||||||||||||||
Sbjct: 363 tattggaaaggctcctaaagataag 387
>gnl|LJGI|FS344047
Length = 672
Score = 184 bits (93), Expect = 9e-46
Identities = 118/125 (94%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 983 gtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctagcagccc 1042
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 549 gtcttaacttgatacctcacaaaa-attctcattcgctaagatgtggcttctagcagccc 607
Query: 1043 aatttgaaatacgtcagctgaatctcaagggtgctcgtctaatattaggaaatgctattg 1102
|||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 608 aatttgaaatacgtcaactgaatctcaaggatgctcgtgtaatattaggaaatgatattg 667
Query: 1103 gaaag 1107
|||||
Sbjct: 668 gaaag 672
>gnl|LJGI|TC57937 similar to UniRef100_Q7SGD2 Cluster: Pre-mRNA-splicing factor clf-1;
n=1; Neurospora crassa|Rep: Pre-mRNA-splicing factor
clf-1 - Neurospora crassa, partial (4%)
Length = 890
Score = 145 bits (73), Expect = 8e-34
Identities = 92/97 (94%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 983 gtcttaacatgatacctcacaaaaaattctcatttgctaagatgtggcttctagcagccc 1042
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 795 gtcttaacttgatacctcacaaaa-attctcattcgctaagatgtggcttctagcagccc 853
Query: 1043 aatttgaaatacgtcagctgaatctcaagggtgctcg 1079
|||||||||||||||| ||||||||||||| ||||||
Sbjct: 854 aatttgaaatacgtcaactgaatctcaaggatgctcg 890