Miyakogusa Predicted Gene

Lj2g3v3088170.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3088170.1 tr|B9FMK1|B9FMK1_ORYSJ Tubulin gamma chain
OS=Oryza sativa subsp. japonica GN=OsJ_17184 PE=3
SV=1,97.01,0,TUBULIN,Tubulin; GAMMATUBULIN,Gamma tubulin; no
description,Tubulin/FtsZ, GTPase domain; TUBULIN GAM,CUFF.39846.1
         (435 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62327 homologue to UniRef100_A7PZS0 Cluster: Chromoso...   416   e-116
gnl|LJGI|TC79627 homologue to UniRef100_Q8GZT0 Cluster: Gamma-tu...   339   9e-93

>gnl|LJGI|TC62327 homologue to UniRef100_A7PZS0 Cluster: Chromosome chr15
           scaffold_40, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_40, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (48%)
          Length = 732

 Score =  416 bits (210), Expect = e-116
 Identities = 228/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggctcatacttgttggagacactggacgaccgctacagcaaaaaactagttcagaca 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 atgggctcatacttgttggagacactgaacgaccgctacagcaaaaaactagttcagaca 558

                                                                       
Query: 61  tacagtgtgtttcctaaccagatggagacaagtgatgtggtggtccaaccttccaattca 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 559 tacagtgtgtttcctaaccaaatggagacaagtgatgtggtggtccaaccttacaattca 618

                                                                       
Query: 121 cttttgacactcaagcgactgactcttaatgcagattgtgttgtagttattgacaatact 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 619 cttttgacactcaagcgactgactcttaatgcagattgtgttgtagttcttgataatact 678

                                                                 
Query: 181 gcactaaatagaattgctgtggaacgacttcatttatcaaatccaacatttgct 234
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 679 gcactaaatagaattgctgtggaacgacttcatttatcaaatccaacttttgct 732


>gnl|LJGI|TC79627 homologue to UniRef100_Q8GZT0 Cluster: Gamma-tubulin; n=1; Lupinus
           albus|Rep: Gamma-tubulin - Lupinus albus (White lupin),
           partial (53%)
          Length = 1126

 Score =  339 bits (171), Expect = 9e-93
 Identities = 180/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 218 caaatccaacatttgctcaaacaaattctttagtttctactgtgatgtctgccagcacaa 277
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1   caaatccaacttttgctcaaacaaattcattagtttctactgtgatgtctgccagcacaa 60

                                                                       
Query: 278 ccactcttcgttatccggggtacatgaataatgacctggttggtcttcttgcctctttga 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccactcttcgttatccggggtacatgaataatgacctggttggtcttcttgcctctttga 120

                                                                       
Query: 338 tcccaacaccaagatgtcattttctaatgactggatatacgcctttgactgtggaacgtc 397
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tcccaacaccaagatgtcattttctaatgactggatatacgcctttgacagtggaacgtc 180

              
Query: 398 agg 400
           |||
Sbjct: 181 agg 183