Miyakogusa Predicted Gene

Lj2g3v3084350.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3084350.2 Non Chatacterized Hit- tr|A5C0V1|A5C0V1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,69.23,4e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; Apc5,Anaphase-promoting complex subunit 5,CUFF.39690.2
         (1710 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS343454 similar to UniRef100_Q67YV2 Cluster: MRNA, com...   658   0.0  

>gnl|LJGI|FS343454 similar to UniRef100_Q67YV2 Cluster: MRNA, complete cds, clone:
           RAFL24-07-B09; n=1; Arabidopsis thaliana|Rep: MRNA,
           complete cds, clone: RAFL24-07-B09 - Arabidopsis
           thaliana (Mouse-ear cress), partial (16%)
          Length = 741

 Score =  658 bits (332), Expect = 0.0
 Identities = 346/353 (98%)
 Strand = Plus / Plus

                                                                       
Query: 161 accataaccgcctcgctttgttcctgttagcactcaccaagtcctgtgatgatatcttgg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 accataaccgcctcgctttgttcctgttagcactcaccaagtcctgtgatgatatcttgg 448

                                                                       
Query: 221 agcctagattggacgagctcatccatcaattgagaatcgtgagccagaactgggaggcag 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agcctagattggacgagctcatccatcaattgagaatcgtgagccagaactgggaggcag 508

                                                                       
Query: 281 catcctgggttattgaccagttgatgagcagactatcatctctgtcatcacctgatgatt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 catcctgggttattgaccagttgatgagcagactatcatctctgtcatcacctgatgatt 568

                                                                       
Query: 341 tgtttaannnnnnnagtgatatacgaggaatacttggaggtccagattcaggtgctgttg 400
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgtttaatttttttagtgatatacgaggaatacttggaggtccagattcaggtgctgttg 628

                                                                       
Query: 401 aagacgaccaggctattttggacatgaacagtaacctggggttatttctccgacgttgta 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagacgaccaggctattttggacatgaacagtaacctggggttatttctccgacgttgta 688

                                                                
Query: 461 ttcttgctttcaatttactatcatttgagggtatatgctatctcttgacaagc 513
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttcttgctttcaatttactatcatttgagggtatatgctatctcttgacaagc 741



 Score =  163 bits (82), Expect = 4e-39
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgggattttgaagcaaccaggtgcatttgcagtgacgccgcacaaagtatcactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atggctgggattttgaagcaaccaggtgcatttgcagtgacgccgcacaaagtatcactc 288

                                 
Query: 61  tgtatactcctcaaaatctacg 82
           ||||||||||||||||||||||
Sbjct: 289 tgtatactcctcaaaatctacg 310