Miyakogusa Predicted Gene
- Lj2g3v3059750.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3059750.1 Non Chatacterized Hit- tr|I1M731|I1M731_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.28135
PE,79.93,0,DEAD,DNA/RNA helicase, DEAD/DEAH box type, N-terminal;
Helicase_C,Helicase, C-terminal; no descripti,CUFF.39699.1
(1746 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60837 similar to UniRef100_Q9LUW6 Cluster: DEAD-box A... 1526 0.0
gnl|LJGI|TC68200 weakly similar to UniRef100_Q2G4D9 Cluster: Sin... 363 2e-99
gnl|LJGI|TC57338 similar to UniRef100_Q2HUZ8 Cluster: Helicase, ... 76 8e-13
>gnl|LJGI|TC60837 similar to UniRef100_Q9LUW6 Cluster: DEAD-box ATP-dependent RNA
helicase 9; n=1; Arabidopsis thaliana|Rep: DEAD-box
ATP-dependent RNA helicase 9 - Arabidopsis thaliana
(Mouse-ear cress), partial (30%)
Length = 794
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 1 atgatcaccgcaatcctcagaagagcttgttccgccctctcgcggcgcggcgccgccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 atgatcaccgcaatcctcagaagagcttgttccgccctctcgcggcgcggcgccgccacc 80
Query: 61 ttcatcgccgcctcaaccgtcaccggcgagctccgtcagctccccgtcgtcgccagggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 ttcatcgccgcctcaaccgtcaccggcgagctccgtcagctccccgtcgtcgccagggca 140
Query: 121 agacacttccactcgaatccagttcccttgcagttccgcgcctctctcccttctctcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agacacttccactcgaatccagttcccttgcagttccgcgcctctctcccttctctcgcc 200
Query: 181 gaattcgccgtcgctgatttcccatacgaagaaggctccaaaaacgatgaagggctcgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcgccgtcgctgatttcccatacgaagaaggctccaaaaacgatgaagggctcgag 260
Query: 241 atcaagaagcttgggatttctgaggaaatcgtctctgccttggccaagaaaggaatctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaagaagcttgggatttctgaggaaatcgtctctgccttggccaagaaaggaatctcc 320
Query: 301 aagctcttccctatccagagggctgtgctggaacctgctatgcaaggtcgtgatatgatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctcttccctatccagagggctgtgctggaacctgctatgcaaggtcgtgatatgatt 380
Query: 361 ggtcgagctagaacaggaactgggaaaactcttgcttttgggatacccatcaaggataag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ggtcgagctagaacaggaactgggaaaactcttgcttttgggatacccatcatggataag 440
Query: 421 attattaagttcaatgctaagcatggacgagggagggatcctttggcattggctttggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattaagttcaatgctaagcatggacgagggagggatcctttggcattggctttggct 500
Query: 481 ccgactcgagaacttgcaaagcaggtggagaaggaattctatgactcagcgcctaacttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgactcgagaacttgcaaagcaggtggagaaggaattctatgactcagcgcctaacttg 560
Query: 541 gatacgatttgtgtttatgggggcactcccatctcgcaacagatgaggcaacttgattat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacgatttgtgtttatgggggcactcccatctcgcaacagatgaggcaacttgattat 620
Query: 601 ggtgttgatgttgtggtgggcacgccgggtcgaattattgaccttctgaacagaggcgct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgttgatgttgtggtgggcacgccgggtcgaattattgaccttctgaacagaggcgct 680
Query: 661 ctaaatttgaaggaggttcagtttatggttcttgacgaagctgatcagatgcttcaaata 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaatttgaaggaggttcagtttatggttcttgacgaagctgatcagatgcttcaaata 740
Query: 721 ggatttcaggaagacgtggagaagatcttggataggttgccccctaaacgtcag 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggatttcaggaagacgtggagaagatcttggataggttgccccctaaacgtcag 794
>gnl|LJGI|TC68200 weakly similar to UniRef100_Q2G4D9 Cluster: Single-stranded
DNA-binding protein; n=1; Novosphingobium aromaticivorans
DSM 12444|Rep: Single-stranded DNA-binding protein -
Novosphingobium aromaticivorans (strain DSM 12444),
partial (23%)
Length = 659
Score = 363 bits (183), Expect = 2e-99
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 1564 ggtaattcatctggtgagaatagatatggtggatcaggctctggtcgttctggctcattt 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtaattcatctggtgagaatagatatggtggatcaggctctggtcgttctggctcattt 60
Query: 1624 ggtggaggtagatctggcggatcatccggtggatttaaatttagtggatcaggtggtggt 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtggaggtagatctggcggatcatccggtggatttaaatttagtggatcaggtggtggt 120
Query: 1684 tttgggggatttggcggttcagataaatctggtggttttggagattttggctcaaggtaa 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgggggatttggcggttcagataaatctggtggttttggagattttggctcaaggtaa 180
Query: 1744 ggc 1746
|||
Sbjct: 181 ggc 183
>gnl|LJGI|TC57338 similar to UniRef100_Q2HUZ8 Cluster: Helicase, C-terminal; Zinc
finger, CCHC-type; GUCT; n=1; Medicago truncatula|Rep:
Helicase, C-terminal; Zinc finger, CCHC-type; GUCT -
Medicago truncatula (Barrel medic), partial (42%)
Length = 1356
Score = 75.8 bits (38), Expect = 8e-13
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 1153 cgtggacttgatatacctaatgttgatcttgtaatacattatgaccttcccaataattca 1212
|||||||||||||| |||||||||||| | || ||||||||||| ||||||||| || |
Sbjct: 1 cgtggacttgatattcctaatgttgatttggttatacattatgaacttcccaatgatcct 60
Query: 1213 gagatatttgttcatcgatctggacgaacaggtcgtgc 1250
|||| ||||| ||||| ||||| || || ||||||||
Sbjct: 61 gagacttttgtacatcgctctggtcgtaccggtcgtgc 98