Miyakogusa Predicted Gene
- Lj2g3v3058520.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v3058520.1 Non Chatacterized Hit- tr|B9R8D3|B9R8D3_RICCO
Skp1, putative OS=Ricinus communis GN=RCOM_1598810
PE=,34.07,0.000000008,Found in Skp1 protein family,SKP1 component; no
description,BTB/POZ fold; Skp1_POZ,SKP1 component, P,CUFF.39650.1
(1062 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67337 similar to UniRef100_Q5YLQ7 Cluster: Ethylene-r... 1253 0.0
gnl|LJGI|BW595905 weakly similar to UniRef100_Q0VT73 Cluster: Tr... 934 0.0
gnl|LJGI|BP069565 254 1e-66
gnl|LJGI|TC59003 similar to UniRef100_A7QEE3 Cluster: Chromosome... 74 2e-12
gnl|LJGI|TC58773 similar to UniRef100_A7QEE3 Cluster: Chromosome... 74 2e-12
gnl|LJGI|TC57717 similar to UniRef100_A7PWQ2 Cluster: Chromosome... 74 2e-12
gnl|LJGI|TC72156 homologue to UniRef100_Q9SHE9 Cluster: LOB doma... 58 1e-07
gnl|LJGI|TC62094 homologue to UniRef100_A7QCS5 Cluster: Chromoso... 58 1e-07
gnl|LJGI|TC61336 similar to UniRef100_A7PWQ2 Cluster: Chromosome... 56 5e-07
>gnl|LJGI|TC67337 similar to UniRef100_Q5YLQ7 Cluster: Ethylene-responsive element
binding factor; n=1; Gossypium hirsutum|Rep:
Ethylene-responsive element binding factor - Gossypium
hirsutum (Upland cotton) (Gossypium mexicanum), partial
(36%)
Length = 1485
Score = 1253 bits (632), Expect = 0.0
Identities = 746/784 (95%)
Strand = Plus / Plus
Query: 279 attgatgcatcttcatttcatgaacctatgcacgagtgaacatggcaggctcttggtaaa 338
||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 447 attgatgtatcaccatttcaataatctatgcacgagtgaacatggcaggctcttggtaaa 506
Query: 339 gcagaggttagtcgcctgttctagtattgagggggtaatagacatcaaaacctgtaagaa 398
|||||| |||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 gcagagtttagtcacatgttctagtattgcgggggtaatagacatcaaaacctgtaagac 566
Query: 399 gaacttcaaggattggttcaagcaaatcaggagggagccggataatcaatttcaaaagca 458
|||||||||||||||||||||||||||| ||||||||||| |||||| | | |||||||
Sbjct: 567 gaacttcaaggattggttcaagcaaatctggagggagccgcataatccacgtgaaaagca 626
Query: 459 tctcaatgatttcataactcttatgaactcccccgactttaggatcttctgctacaatat 518
| || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 627 tttcgatgatttcagaactcttatgaactcccccgactttaggatcttctgttacaatat 686
Query: 519 ctaccagtctaccgagcgcgtcccgttgctaccgacacctcatgtttctcaagataccat 578
|||||||||| || ||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 687 ctaccagtcttccaagcacgtcccgttgctactgacacctcgtgtttctcaagataccat 746
Query: 579 ctctttaagaagctctgataaggtggtctttgagatgaataagatggttgcaatctctga 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctctttaagaagctctgataaggtggtctttgagatgaataagatggttgcaatctctga 806
Query: 639 atcaaagcttcttaaagacgttattgaatgtcacccaaatgaagatgagattcccgtgcc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 807 atcaaagcttcttaaagacgttattgaatgtcacccaaatgaagatgagattcccttgcc 866
Query: 699 tcgagtatccagcctcgtcctcccggaggtcatctccttttgcgagaagaaactcaaatt 758
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tcgagtatccagcctcatcctcccggaggtcatctccttttgcgagaagaaactcaaatt 926
Query: 759 cgatcagctctttaagagtattggggagattttgaagactgttttcatcccctaccaagc 818
||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| | ||
Sbjct: 927 cgatcagctttttaagagcattgcggagattttgaagactgttttcatcccctacaatgc 986
Query: 819 ttgggtcacacgcttcgtcaacaataatcatagcattttctctcacttgcatgatgctgc 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ttgggtcacacgcttcgtcaacaataatcatagcattttctctcacttgcatgatgctgc 1046
Query: 879 gaactttctcaacattccaagcctttttgagtttacatcacttttcactggactgcaaga 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1047 gaactttctcaacattccaagcctttttgagtttacatcacttttcactggactggaaga 1106
Query: 939 tagaggtgaaaacgaaaacaaaattcaagagacatcgaagtggtattcagcatcatccat 998
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1107 tagaggtgaaaacgaaaacaaaattcaagagacatcgaagtggtattcagcattatccat 1166
Query: 999 gctttcaactatggggattgatattggagaagcttcttatatttcgctaaattttggata 1058
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct: 1167 gctttcaactatggggattgagattggagaaccttcttatatttcgctaaatttgggata 1226
Query: 1059 actc 1062
||||
Sbjct: 1227 actc 1230
>gnl|LJGI|BW595905 weakly similar to UniRef100_Q0VT73 Cluster: Transcriptional
regulator, AraC family; n=1; Alcanivorax borkumensis
SK2|Rep: Transcriptional regulator, AraC family -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573), partial (5%)
Length = 485
Score = 934 bits (471), Expect = 0.0
Identities = 474/475 (99%)
Strand = Plus / Plus
Query: 387 aacctgtaagaagaacttcaaggattggttcaagcaaatcaggagggagccggataatca 446
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 aacctgtaagaagaacttcaaggattggttcacgcaaatcaggagggagccggataatca 70
Query: 447 atttcaaaagcatctcaatgatttcataactcttatgaactcccccgactttaggatctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atttcaaaagcatctcaatgatttcataactcttatgaactcccccgactttaggatctt 130
Query: 507 ctgctacaatatctaccagtctaccgagcgcgtcccgttgctaccgacacctcatgtttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctgctacaatatctaccagtctaccgagcgcgtcccgttgctaccgacacctcatgtttc 190
Query: 567 tcaagataccatctctttaagaagctctgataaggtggtctttgagatgaataagatggt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcaagataccatctctttaagaagctctgataaggtggtctttgagatgaataagatggt 250
Query: 627 tgcaatctctgaatcaaagcttcttaaagacgttattgaatgtcacccaaatgaagatga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgcaatctctgaatcaaagcttcttaaagacgttattgaatgtcacccaaatgaagatga 310
Query: 687 gattcccgtgcctcgagtatccagcctcgtcctcccggaggtcatctccttttgcgagaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gattcccgtgcctcgagtatccagcctcgtcctcccggaggtcatctccttttgcgagaa 370
Query: 747 gaaactcaaattcgatcagctctttaagagtattggggagattttgaagactgttttcat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaactcaaattcgatcagctctttaagagtattggggagattttgaagactgttttcat 430
Query: 807 cccctaccaagcttgggtcacacgcttcgtcaacaataatcatagcattttctct 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cccctaccaagcttgggtcacacgcttcgtcaacaataatcatagcattttctct 485
>gnl|LJGI|BP069565
Length = 398
Score = 254 bits (128), Expect = 1e-66
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 931 ctgcaagatagaggtgaaaacgaaaacaaaattcaagagacatcgaagtggtattcagca 990
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 398 ctgcaagatagaggtgaaaacgaaaaccaaattcaagagacatcgaagtggtattcagca 339
Query: 991 tcatccatgctttcaactatggggattgatattggagaagcttcttatatttcgctaaat 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcatccatgctttcaactatggggattgatattggagaagcttcttatatttcgctaaat 279
Query: 1051 tttggataactc 1062
||||||||||||
Sbjct: 278 tttggataactc 267
>gnl|LJGI|TC59003 similar to UniRef100_A7QEE3 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 792
Score = 73.8 bits (37), Expect = 2e-12
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 842 ataatcatagcattttctctcacttgcatgatgctgcgaactttctcaacattccaa 898
||||||| ||||||||||| || || |||||||||||||||| ||||||||||||||
Sbjct: 705 ataatcaaagcattttctcccagttacatgatgctgcgaactatctcaacattccaa 761
>gnl|LJGI|TC58773 similar to UniRef100_A7QEE3 Cluster: Chromosome chr1 scaffold_84,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_84, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 806
Score = 73.8 bits (37), Expect = 2e-12
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 842 ataatcatagcattttctctcacttgcatgatgctgcgaactttctcaacattccaa 898
||||||| ||||||||||| || || ||||||||||||| |||||||||||||||||
Sbjct: 719 ataatcaaagcattttctcccagttacatgatgctgcgagctttctcaacattccaa 775
>gnl|LJGI|TC57717 similar to UniRef100_A7PWQ2 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 1138
Score = 73.8 bits (37), Expect = 2e-12
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 842 ataatcatagcattttctctcacttgcatgatgctgcgaactttctcaacattccaa 898
||||||| ||||||||||| || || ||||||||||||| |||||||||||||||||
Sbjct: 701 ataatcaaagcattttctcccagttacatgatgctgcgagctttctcaacattccaa 757
>gnl|LJGI|TC72156 homologue to UniRef100_Q9SHE9 Cluster: LOB domain-containing
protein 4; n=1; Arabidopsis thaliana|Rep: LOB
domain-containing protein 4 - Arabidopsis thaliana
(Mouse-ear cress), partial (67%)
Length = 945
Score = 58.0 bits (29), Expect = 1e-07
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 24 ctgtgctgcttgcaagatcctccgtagaaattgcactcagaattgtgtttttgctcc 80
||||||||| |||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct: 92 ctgtgctgcatgcaagctcctccgtagaaggtgtgctcaggattgtgtttttgctcc 148
>gnl|LJGI|TC62094 homologue to UniRef100_A7QCS5 Cluster: Chromosome undetermined
scaffold_79, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_79, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 764
Score = 58.0 bits (29), Expect = 1e-07
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 24 ctgtgctgcttgcaagatcctccgtagaaattgcactcagaattgtgtttttgctcc 80
||||||||| |||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct: 377 ctgtgctgcatgcaagctcctccgtagaaggtgtgctcaggattgtgtttttgctcc 321
>gnl|LJGI|TC61336 similar to UniRef100_A7PWQ2 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 798
Score = 56.0 bits (28), Expect = 5e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 842 ataatcatagcattttctctcacttgcatgatgctgcgaactttctca 889
||||||| ||||||||||| || || ||||||||||||| ||||||||
Sbjct: 747 ataatcaaagcattttctcccagttacatgatgctgcgagctttctca 794