Miyakogusa Predicted Gene

Lj2g3v3022790.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3022790.1 Non Chatacterized Hit- tr|Q2QQL7|Q2QQL7_ORYSJ
Retrotransposon protein, putative, Ty1-copia subclass
,49.41,2e-19,PREDICTED PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,CUFF.39604.1
         (261 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP057233                                                      52   2e-06

>gnl|LJGI|BP057233 
          Length = 473

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 211 gttgttgcttatgtaccaactgcagatcaaactgcagattgtctcaccaa 260
           ||||| |||||||| || ||  ||||||||| ||||||||||||||||||
Sbjct: 325 gttgtggcttatgtccctacaacagatcaaattgcagattgtctcaccaa 276