Miyakogusa Predicted Gene

Lj2g3v3022770.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v3022770.1 Non Chatacterized Hit- tr|F6HA93|F6HA93_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.83,3e-19,seg,NULL; AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.39625.1
         (351 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77268 similar to UniRef100_A7R889 Cluster: Chromosome...   137   5e-32

>gnl|LJGI|TC77268 similar to UniRef100_A7R889 Cluster: Chromosome undetermined
            scaffold_2360, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_2360,
            whole genome shotgun sequence - Vitis vinifera (Grape),
            partial (43%)
          Length = 1094

 Score =  137 bits (69), Expect = 5e-32
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                        
Query: 129  gaagattgatctcactgatatcaagcgccacagccttgggaatgaacgggagttcatcaa 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gaagattgatctcactgatatcaagcgccacagccttgggaatgaacgggagttcatcaa 1035

                     
Query: 189  tgccaatcg 197
            |||||||||
Sbjct: 1034 tgccaatcg 1026



 Score = 97.6 bits (49), Expect = 4e-20
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                            
Query: 303 ggggaaaaagaggatccttacctacataaattgttgcattaggccttga 351
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggggaaaaagaggatccttacctacataaattgttgcattaggccttga 659



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 264 ccacggacatggacatgctcatgaagaacctatagtcatgg 304
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ccacggacatggacatgctcatgaagaacctatagtcatgg 919