Miyakogusa Predicted Gene
- Lj2g3v2986050.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2986050.2 Non Chatacterized Hit- tr|I1JIR6|I1JIR6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9030
PE=,72.91,0,La,RNA-binding protein Lupus La; Domain in the RNA-binding
Lupus La protein;,RNA-binding protein Lup,CUFF.39560.2
(2781 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73786 similar to UniRef100_A7PG84 Cluster: Chromosome... 995 0.0
gnl|LJGI|AV780744 UniRef100_A9T1Z0 Cluster: Predicted protein; n... 862 0.0
gnl|LJGI|AV408729 similar to UniRef100_A7R117 Cluster: Chromosom... 54 5e-06
>gnl|LJGI|TC73786 similar to UniRef100_A7PG84 Cluster: Chromosome chr6 scaffold_15,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_15, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (17%)
Length = 1064
Score = 995 bits (502), Expect = 0.0
Identities = 540/548 (98%), Gaps = 6/548 (1%)
Strand = Plus / Plus
Query: 2234 caacaccaaagtcttttccaccttttcagcatccgagtcaccaactcttagaagaaaatg 2293
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct: 1 caacaccaaagtcttttccacctttt-agcatccgagtcaccaactctta-aagat--tt 56
Query: 2294 gtttcaaacaacaaaagtacctgaagtatcagaaacgctgcttgaatgaaagaaagaaac 2353
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gttt--aacaacaaaagtacctgaagtatcagaaacgctgcttgaatgaaagaaagaaac 114
Query: 2354 ttggagttggctgcagtgaggaaatgaatacattatacaggttctggtcatattttcttc 2413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttggagttggctgcagtgaggaaatgaatacattatacaggttctggtcatattttcttc 174
Query: 2414 gagacctgtttgttccttctatgtacaatgaatttaagaaattagccatggaagatgcgg 2473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gagacctgtttgttccttctatgtacaatgaatttaagaaattagccatggaagatgcgg 234
Query: 2474 ctgctaattaccattatggcatggagtgccttttcaggttcttcagttacggtttggaga 2533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctgctaattaccattatggcatggagtgccttttcaggttcttcagttacggtttggaga 294
Query: 2534 aagaatttagagatgatttgtacaaggattttgagcagctttctctggatttctaccata 2593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagaatttagagatgatttgtacaaggattttgagcagctttctctggatttctaccata 354
Query: 2594 agggcaatctgtatggcctggaaaaatattgggcgttccaccattatcgcaagttacgca 2653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agggcaatctgtatggcctggaaaaatattgggcgttccaccattatcgcaagttacgca 414
Query: 2654 accagaaagaacctttgcataaacaccctgaactggagaagttgctcagagaagaatatc 2713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 accagaaagaacctttgcataaacaccctgaactggagaagttgctcagagaagaatatc 474
Query: 2714 gtagcttggaggatttccgcgccaaagaaaagaaccttgtaaaagaggataccaaaaagg 2773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtagcttggaggatttccgcgccaaagaaaagaaccttgtaaaagaggataccaaaaagg 534
Query: 2774 ttgagtga 2781
||||||||
Sbjct: 535 ttgagtga 542
>gnl|LJGI|AV780744 UniRef100_A9T1Z0 Cluster: Predicted protein; n=1; Physcomitrella
patens subsp. patens|Rep: Predicted protein -
Physcomitrella patens subsp. patens, partial (10%)
Length = 489
Score = 862 bits (435), Expect = 0.0
Identities = 479/490 (97%), Gaps = 4/490 (0%)
Strand = Plus / Plus
Query: 1171 gtttcttcaggaaattcaggatcatcaacggcacagattcaacagagccgactagtaaag 1230
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct: 4 gtttcttcaggaaattcaggatcac--acggcacagat-caacagagccgactagtagag 60
Query: 1231 ggtgctgacaattctcaaaatattgatgctcttggagataagacaatggagtcttctaat 1290
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtgctgacaattctcaaaatat-gatgctcttggagataagacaatggagtcttctaat 119
Query: 1291 gaagatcatagagatgctgctcataattctgtttcgatggagcataatcagtcaaacaaa 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaagatcatagagatgctgctcataattctgtttcgatggagcataatcagtcaaacaaa 179
Query: 1351 gatgcatcacaaatttcacatttgaagcgagaacaagatactgaaagtcatcattccaat 1410
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 180 gatgcatcacaaatttcacattggaagcgagaacaagatactgaaagtcatcattccaat 239
Query: 1411 gatgtatcacatgcagtaactggtgaaagtgtcacattctctagttttgacagaactaat 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gatgtatcacatgcagtaactggtgaaagtgtcacattctctagttttgacagaactaat 299
Query: 1471 aatagctgccactcacaagaaactgagcccaaaatatttgattatgatgaaactgaaaac 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aatagctgccactcacaagaaactgagcccaaaatatttgattatgatgaaactgaaaac 359
Query: 1531 atggatgttttagctgatatggaaatcggagatcattccaatgattttggcaatacgttt 1590
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 360 atggatgttttagctgatatggaaatcggagatcattccaatgattcgggcaatacgttt 419
Query: 1591 atgcttgatgaagagatagaacttgagcagaagatgttaaagaagtctgaggtgtcttct 1650
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 420 atgcttgatgaagagatagaacttgagcagaagatgtcacagaagtctgaggtgtcttct 479
Query: 1651 cctacaagga 1660
||||||||||
Sbjct: 480 cctacaagga 489
>gnl|LJGI|AV408729 similar to UniRef100_A7R117 Cluster: Chromosome chr4 scaffold_333,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_333, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 433
Score = 54.0 bits (27), Expect = 5e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1117 gaagtgcagggtgacaagataaggaaaagcaatgattgg 1155
||||||||||||||||||||||||| | | |||||||||
Sbjct: 252 gaagtgcagggtgacaagataaggagacgaaatgattgg 290