Miyakogusa Predicted Gene
- Lj2g3v2900220.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2900220.1 tr|A5Y4H1|A5Y4H1_MEDTR Class I KNOX homeobox
transcription factor OS=Medicago truncatula GN=KNOX6
PE,81.17,0,seg,NULL; HOMEOBOX_1,Homeobox, conserved site;
Homeodomain-like,Homeodomain-like; HOMEOBOX_2,Homeodo,CUFF.39411.1
(918 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO011174 homologue to UniRef100_A5Y4H1 Cluster: Class I... 597 e-170
gnl|LJGI|TC72803 UniRef100_A5Y4H1 Cluster: Class I KNOX homeobox... 410 e-114
gnl|LJGI|NP7225981 GB|AY790246.1|AAX21345.1 homeobox knotted-1-l... 137 1e-31
gnl|LJGI|BP036080 similar to UniRef100_A3QNN5 Cluster: Homeodoma... 115 5e-25
gnl|LJGI|TC66466 similar to UniRef100_Q9SXV1 Cluster: KN1-type h... 70 3e-11
gnl|LJGI|TC76769 homeobox knotted-1-like protein KNOX2;homeobox ... 66 4e-10
gnl|LJGI|TC70761 UniRef100_Q4VPF0 Cluster: Homeobox knotted-1-li... 58 1e-07
gnl|LJGI|TC79136 similar to UniRef100_A9CR84 Cluster: Class 2 kn... 56 4e-07
gnl|LJGI|TC61440 similar to UniRef100_A6XHG4 Cluster: Class II k... 56 4e-07
>gnl|LJGI|GO011174 homologue to UniRef100_A5Y4H1 Cluster: Class I KNOX homeobox
transcription factor; n=1; Medicago truncatula|Rep:
Class I KNOX homeobox transcription factor - Medicago
truncatula (Barrel medic), partial (25%)
Length = 648
Score = 597 bits (301), Expect = e-170
Identities = 310/313 (99%)
Strand = Plus / Plus
Query: 1 atggacatgatgaacatggaaactaataggaagttcctttctctgcctctgagcaacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atggacatgatgaacatggaaactaataggaagttcctttctctgcctctgagcaacaac 395
Query: 61 agcaacaacaattctggtccccagatgagaagggtacctgttgtcatgagcaatgctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcaacaacaattctggtccccagatgagaagggtacctgttgtcatgagcaatgctcaa 455
Query: 121 gatcataactacagcagccagcaacagcaggaccacaacactagcagtagtgtgagggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatcataactacagcagccagcaacagcaggaccacaacactagcagtagtgtgagggac 515
Query: 181 aagatcatggctcatcctctctttcctcgtctcttgtcctcttaccttaattgcctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagatcatggctcatcctctctttcctcgtctcttgtcctcttaccttaattgcctcaag 575
Query: 241 gttggagcacctcctgaagtggtggctagtttagaggaatcatgtgccaaatgtgagtcc 300
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||
Sbjct: 576 gttggagcacctcctgaagtagtggctagtttagaggagtcatgtgcctaatgtgagtcc 635
Query: 301 ttgaatgcatctg 313
|||||||||||||
Sbjct: 636 ttgaatgcatctg 648
>gnl|LJGI|TC72803 UniRef100_A5Y4H1 Cluster: Class I KNOX homeobox transcription
factor; n=1; Medicago truncatula|Rep: Class I KNOX
homeobox transcription factor - Medicago truncatula
(Barrel medic), partial (22%)
Length = 484
Score = 410 bits (207), Expect = e-114
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 712 tacccatcggaatctcaaaagcaagcacttgcagaatccactggattggatctgaagcag 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacccatcggaatctcaaaagcaagcacttgcagaatccactggattggatctgaagcag 60
Query: 772 ataaacaactggttcatcaatcagagaaaacgtcattggaagccttctgaggatatgcaa 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataaacaactggttcatcaatcagagaaaacgtcattggaagccttctgaggatatgcaa 120
Query: 832 tttgctgtgatggatgcaactaactactatatggaaaatgttatgtgcaagccatttcct 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgctgtgatggatgcaactaactactatatggaaaatgttatgtgcaagccatttcct 180
Query: 892 atggatgccatgccaatgcttctttaa 918
|||||||||||||||||||||||||||
Sbjct: 181 atggatgccatgccaatgcttctttaa 207
>gnl|LJGI|NP7225981 GB|AY790246.1|AAX21345.1 homeobox knotted-1-like protein
KNOX1;homeobox transcription factor; LjKN1
Length = 543
Score = 137 bits (69), Expect = 1e-31
Identities = 114/129 (88%)
Strand = Plus / Plus
Query: 337 ggtgaagatccagctctggatcagttcatggaggcttattgtgagatgctcatcaagtat 396
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 130 ggtgaagatccagctctggatcagttcatggaggcttactgtgagatgctgaccaagtat 189
Query: 397 gagcatgagctcacaaaacccttcaaggaagccatgcttttcttttcaaggattgagtgt 456
||||| |||||| | ||||| || |||||||||||||| ||| || |||||| |||| |
Sbjct: 190 gagcaagagctctccaaaccattaaaggaagccatgctcttccttcaaaggatcgagttt 249
Query: 457 cagctcaaa 465
||| |||||
Sbjct: 250 cagttcaaa 258
Score = 58.0 bits (29), Expect = 1e-07
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 629 tgaagaagaaaaagaatggaaagttgccaaaggaagctaggcagcagctactagattggt 688
||||||||| ||||| |||||| | ||||| ||||| ||||| || | || || ||||
Sbjct: 437 tgaagaagaggaagaaaggaaagctaccaaaagaagcaaggcaacaatttcttgaatggt 496
Query: 689 ggaacaggcattacaaatggccttaccca 717
||| ||| |||||||||||||||||||||
Sbjct: 497 ggagcagacattacaaatggccttaccca 525
>gnl|LJGI|BP036080 similar to UniRef100_A3QNN5 Cluster: Homeodomain protein Kn1; n=1;
Prunus dulcis|Rep: Homeodomain protein Kn1 - Prunus
dulcis (Almond) (Prunus amygdalus), partial (21%)
Length = 395
Score = 115 bits (58), Expect = 5e-25
Identities = 127/150 (84%)
Strand = Plus / Minus
Query: 685 tggtggaacaggcattacaaatggccttacccatcggaatctcaaaagcaagcacttgca 744
||||||| ||| ||||||||||||||||||||||||||||| || |||| || ||||||
Sbjct: 390 tggtggagcagacattacaaatggccttacccatcggaatcacagaagcttgcgcttgca 331
Query: 745 gaatccactggattggatctgaagcagataaacaactggttcatcaatcagagaaaacgt 804
|| | || || |||||| |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 330 gaggcaacaggtctggatcagaagcaaattaacaactggtttatcaatcagaggaaacgg 271
Query: 805 cattggaagccttctgaggatatgcaattt 834
|| ||||| |||||||| || |||||||||
Sbjct: 270 cactggaaaccttctgatgacatgcaattt 241
>gnl|LJGI|TC66466 similar to UniRef100_Q9SXV1 Cluster: KN1-type homeobox protein; n=1;
Nicotiana tabacum|Rep: KN1-type homeobox protein -
Nicotiana tabacum (Common tobacco), partial (64%)
Length = 1430
Score = 69.9 bits (35), Expect = 3e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 766 aagcagataaacaactggttcatcaatcagagaaaacgtcattggaagccttctgaggat 825
|||||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||| |||
Sbjct: 1098 aagcagatcaacaattggttcatcaatcagaggaaacggcattggaaaccatctgaagat 1157
Query: 826 atg 828
|||
Sbjct: 1158 atg 1160
>gnl|LJGI|TC76769 homeobox knotted-1-like protein KNOX2;homeobox transcription factor;
LjKN2
Length = 1740
Score = 65.9 bits (33), Expect = 4e-10
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 751 actggattggatctgaagcagataaacaactggttcatcaatcagagaaaacgtcattgg 810
||||| ||||||| |||||||||||||||||||||||| ||||| || || | ||||||
Sbjct: 1380 actggtttggatcagaagcagataaacaactggttcattaatcaaaggaagaggcattgg 1439
Query: 811 aagccttctgaggatatgcaatttgctgtgatggatg 847
|| || ||||| || ||||| ||| ||||||||||
Sbjct: 1440 aaaccatctgaagacatgcagtttatggtgatggatg 1476
>gnl|LJGI|TC70761 UniRef100_Q4VPF0 Cluster: Homeobox knotted-1-like protein KNOX3;
n=1; Lotus japonicus|Rep: Homeobox knotted-1-like
protein KNOX3 - Lotus japonicus, complete
Length = 1250
Score = 58.0 bits (29), Expect = 1e-07
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 765 gaagcagataaacaactggttcatcaatcagagaaaacgtcattggaagccttctgagga 824
|||||| || ||||| ||||| || |||||||||||||| |||||||| || |||||| |
Sbjct: 854 gaagcaaattaacaattggtttattaatcagagaaaacgacattggaaaccatctgagaa 913
Query: 825 tatgcaatttgctgtgatgga 845
||||| ||| || |||||||
Sbjct: 914 catgcagttttctatgatgga 934
>gnl|LJGI|TC79136 similar to UniRef100_A9CR84 Cluster: Class 2 knotted1-like protein;
n=1; Nicotiana tabacum|Rep: Class 2 knotted1-like
protein - Nicotiana tabacum (Common tobacco), partial
(19%)
Length = 599
Score = 56.0 bits (28), Expect = 4e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 766 aagcagataaacaactggttcatcaatcagagaaaa 801
||||||||||||||||||||||| ||||| ||||||
Sbjct: 192 aagcagataaacaactggttcattaatcaaagaaaa 227
>gnl|LJGI|TC61440 similar to UniRef100_A6XHG4 Cluster: Class II knotted-like homeobox
protein; n=1; Prunus persica|Rep: Class II knotted-like
homeobox protein - Prunus persica (Peach), partial (29%)
Length = 855
Score = 56.0 bits (28), Expect = 4e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 766 aagcagataaacaactggttcatcaatcagagaaaa 801
||||||||||||||||||||||| ||||| ||||||
Sbjct: 321 aagcagataaacaactggttcattaatcaaagaaaa 356