Miyakogusa Predicted Gene

Lj2g3v2702340.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2702340.1 Non Chatacterized Hit- tr|K4DAY4|K4DAY4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,38.62,2e-19,Homeodomain,Homeodomain;
Homeodomain-like,Homeodomain-like; Homeobox,Homeodomain;
HOMEOBOX_2,Homeodo,CUFF.39210.1
         (537 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW605972 homologue to UniRef100_Q8H1D2 Cluster: WUSCHEL...   575   e-163

>gnl|LJGI|BW605972 homologue to UniRef100_Q8H1D2 Cluster: WUSCHEL-related homeobox 5;
           n=1; Arabidopsis thaliana|Rep: WUSCHEL-related homeobox
           5 - Arabidopsis thaliana (Mouse-ear cress), partial
           (34%)
          Length = 448

 Score =  575 bits (290), Expect = e-163
 Identities = 386/414 (93%), Gaps = 3/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggacgagaataacatgtcagggttttgtattagaggtggtagtggtggcaatagtggt 60
           |||||| | ||||||||||| ||||||||||||| |||||||||||| ||| |||| |||
Sbjct: 35  atggacaaaaataacatgtccgggttttgtattacaggtggtagtggcggctatagaggt 94

                                                                       
Query: 61  accaagtgtgggcgttggaatcccactacggaacaggttaaggttctgactgaactgttc 120
           |||   || ||||  |||| ||||||||| ||||  |||| || ||||||||| ||||||
Sbjct: 95  accctctgggggccctggattcccactaccgaacttgttagggctctgactgacctgttc 154

                                                                       
Query: 121 ag-ttctggg-cttcgtacacccagca-ctgatcagattcagaagatctctactcagttg 177
           || ||||||| ||||||||||||| |  ||||||||||||| ||||||||||||  ||||
Sbjct: 155 agattctgggtcttcgtacacccacctgctgatcagattcacaagatctctactgggttg 214

                                                                       
Query: 178 agtttttatgggaagatagagagcaagaatgtgttctattggtttcagaatcacaaggcc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agtttttatgggaagatagagagcaagaatgtgttctattggtttcagaatcacaaggcc 274

                                                                       
Query: 238 agggagagacagaagcggcgcaaggtcacctttgatgacaaggatttcaatgtgattctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agggagagacagaagcggcgcaaggtcacctttgatgacaaggatttcaatgtgattctt 334

                                                                       
Query: 298 agagaaaattccatgtccaagaattcttctaaacaaaattatgcacagttctatcaggtt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agagaaaattccatgtccaagaattcttctaaacaaaattatgcacagttctatcaggtt 394

                                                                 
Query: 358 acagagccagagagggtgattgagactcttcaactcttccctttgaactccttt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acagagccagagagggtgattgagactcttcaactcttccctttgaactccttt 448