Miyakogusa Predicted Gene

Lj2g3v2647200.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2647200.1 Non Chatacterized Hit- tr|G7IXZ2|G7IXZ2_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,41.54,0.000009,seg,NULL; no description,Ribonuclease H1,
N-terminal; Cauli_VI,Ribonuclease H1, N-terminal; L9
N-dom,gene.g43561.t1.1
         (1749 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75902                                                      410   e-113

>gnl|LJGI|TC75902 
          Length = 1041

 Score =  410 bits (207), Expect = e-113
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 481 cagacaggaaagagggtgaaagactacaattatcatgtgttggacgacattcacaatgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cagacaggaaagagggtgaaagactacaattatcatgtgttggacgacattcacaatgag 584

                                                                       
Query: 541 ttgcaggtgaaagaagtacaaatcaaagacttgaaacgggatttggaagagaaggacaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgcaggtgaaagaagtacaaatcaaagacttgaaacgggatttggaagagaaggacaag 644

                                                                       
Query: 601 gaaattgcgggctttggtggtcagttaggaaagaaggaggaacagatcacaatcatggct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaaattgcgggctttggtggtcagttaggaaagaaggaggaacagatcacaatcatggct 704

                                      
Query: 661 gaagagatcgcacttcttgagcaggag 687
           |||||||||||||||||||||||||||
Sbjct: 705 gaagagatcgcacttcttgagcaggag 731



 Score =  299 bits (151), Expect = 3e-80
 Identities = 175/184 (95%), Gaps = 1/184 (0%)
 Strand = Plus / Plus

                                                                       
Query: 301 gatgaaaacatgcgtgatgacttggatgagtgggaagaggtggaggtgactgacccacaa 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gatgaaagcatgcgtgatgacttggatgagtgggaagaggtggaggtgactgacccacaa 276

                                                                       
Query: 361 gatttcgtggttgaatttagccttgcaactctccttggaaacgtttgtgaagccctcgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gatttcgtggttgaatttagccttgcaactctccttggaaacgtttgtgaagccctcgag 336

                                                                       
Query: 421 ctacctccgcctgtgt-nnnnnnntggtagacacaaaagcatgtgcaggtgttccgcacc 479
           ||||||||||||||||        ||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctacctccgcctgtgtggggggggtggtagacacaaaagcatgtgcaggtgttccgcacc 396

               
Query: 480 acag 483
           ||||
Sbjct: 397 acag 400