Miyakogusa Predicted Gene
- Lj2g3v2598830.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2598830.1 Non Chatacterized Hit- tr|K4C5X0|K4C5X0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,50,2e-16,zf-XS,Zinc finger-XS domain; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT
P38-R,gene.Ljchr2_pseudomol_20120830.path1.gene6654.1
(681 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS320616 weakly similar to UniRef100_A7PIT9 Cluster: Ch... 634 0.0
gnl|LJGI|TC78612 similar to UniRef100_A7PIT9 Cluster: Chromosome... 96 3e-19
gnl|LJGI|BW596862 weakly similar to UniRef100_A7NYZ4 Cluster: Ch... 70 2e-11
>gnl|LJGI|FS320616 weakly similar to UniRef100_A7PIT9 Cluster: Chromosome chr13
scaffold_17, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_17, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 719
Score = 634 bits (320), Expect = 0.0
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 1 atggctcagttctctaaccaggacactgatataaggagtacatctcaattaagttggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atggctcagttctctaaccaggacactgatataaggagtacatctcaattaagttggtgg 252
Query: 61 tatgtggttaaatcttacgaagaacttagaaagggggttcacaaggtgaaaacctcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tatgtggttaaatcttacgaagaacttagaaagggggttcacaaggtgaaaacctcatat 312
Query: 121 gagactttcagttgtccattctgccctgggagaaaacaggattataagtatgtggaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gagactttcagttgtccattctgccctgggagaaaacaggattataagtatgtggaactc 372
Query: 181 cttaatcatgcttctggggtgggtcggagtagttcagacaagagaagtgctgaagagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cttaatcatgcttctggggtgggtcggagtagttcagacaagagaagtgctgaagagaag 432
Query: 241 ggtaatcatctagctttagtgaaatatatggagaaggaccttatgagtatgggtggccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggtaatcatctagctttagtgaaatatatggagaaggaccttatgagtatgggtggccca 492
Query: 301 tcaaaacctgtagataaagg 320
||||||||||||||||||||
Sbjct: 493 tcaaaacctgtagataaagg 512
Score = 113 bits (57), Expect = 1e-24
Identities = 225/281 (80%)
Strand = Plus / Plus
Query: 371 catctcaaataagttggtggtatgtagatgcatcttacgaagagctcaaaaatggaagtc 430
|||||||| |||||||||||||||| | | |||||||||||| || | ||| || ||
Sbjct: 233 catctcaattaagttggtggtatgtggttaaatcttacgaagaacttagaaagggggttc 292
Query: 431 gaaatgtgaaaacatcagatgagactttaacctgtccgtactgccctaagaggaagcagg 490
|| |||||||| ||| |||||||||| | ||||| | ||||||| ||| || ||||
Sbjct: 293 acaaggtgaaaacctcatatgagactttcagttgtccattctgccctgggagaaaacagg 352
Query: 491 actatatgtacagggaactcctagaacatgcttatatggtgggacggagtagttccgaaa 550
| |||| ||| ||||||||| | ||||||| | |||||| ||||||||||| || |
Sbjct: 353 attataagtatgtggaactccttaatcatgcttctggggtgggtcggagtagttcagaca 412
Query: 551 agagaagtgctagagagagggctaatcatctggctttagtgaagtatttggaaaaggatc 610
||||||||||| ||||| || ||||||||| ||||||||||| ||| |||| ||||| |
Sbjct: 413 agagaagtgctgaagagaagggtaatcatctagctttagtgaaatatatggagaaggacc 472
Query: 611 tcatgagtatggatgggccttcaaaagttgttgataaaggt 651
| |||||||||| ||| || |||||| ||| |||||||||
Sbjct: 473 ttatgagtatgggtggcccatcaaaacctgtagataaaggt 513
Score = 95.6 bits (48), Expect = 3e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 318 aggcacaacatctgtaatggctcacttctttaacgaggatactgacgc 365
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aggcacaacatctgtaatggctcacttctttaacgaggatactgacgc 719
>gnl|LJGI|TC78612 similar to UniRef100_A7PIT9 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (77%)
Length = 1863
Score = 95.6 bits (48), Expect = 3e-19
Identities = 167/206 (81%), Gaps = 3/206 (1%)
Strand = Plus / Plus
Query: 409 gaagagctcaaaaatggaagtcgaaatgtgaaaacatcagatgagactttaacctgtccg 468
||||| || ||||||||||||| ||||||||||| ||||||||||| || || |||||
Sbjct: 261 gaagaactgaaaaatggaagtcagaatgtgaaaacctcagatgagaccttcacttgtcca 320
Query: 469 tactgccct---aagaggaagcaggactatatgtacagggaactcctagaacatgcttat 525
||||||||| || ||||| | ||| ||| | |||| |||||||| ||||||||| |
Sbjct: 321 tactgccctaaaaaaaggaaacgggattatttatacaatgaactccttcaacatgcttct 380
Query: 526 atggtgggacggagtagttccgaaaagagaagtgctagagagagggctaatcatctggct 585
|||||| | |||| |||| ||||||||| || | ||| | |||||||||| ||||
Sbjct: 381 ggggtgggtcagagtggttcacaaaagagaaaggcaaaagaaaaggctaatcatttggcc 440
Query: 586 ttagtgaagtatttggaaaaggatct 611
|||||||| |||||||||||||||||
Sbjct: 441 ttagtgaaatatttggaaaaggatct 466
Score = 71.9 bits (36), Expect = 5e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 175 gaactccttaatcatgcttctggggtgggtcggagtagttcagacaagagaagtgctgaa 234
||||||||| | ||||||||||||||||||| |||| ||||| | ||||||| || ||
Sbjct: 360 gaactccttcaacatgcttctggggtgggtcagagtggttcacaaaagagaaaggcaaaa 419
Query: 235 gagaagggtaatcatctagctttagtgaaatatatggagaagga 278
|| |||| ||||||| | || |||||||||||| |||| |||||
Sbjct: 420 gaaaaggctaatcatttggccttagtgaaatatttggaaaagga 463
>gnl|LJGI|BW596862 weakly similar to UniRef100_A7NYZ4 Cluster: Chromosome chr6
scaffold_3, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_3, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 490
Score = 69.9 bits (35), Expect = 2e-11
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 409 gaagagctcaaaaatggaagtcgaaatgtgaaaacatcagatgagactttaacctgtccg 468
||||| || ||||||||||||| ||||||||||| ||||||||||| || || |||||
Sbjct: 255 gaagaactgaaaaatggaagtcagaatgtgaaaacctcagatgagaccttcacttgtcca 314
Query: 469 tactgccctaa 479
|||||||||||
Sbjct: 315 tactgccctaa 325
Score = 52.0 bits (26), Expect = 5e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 106 gtgaaaacctcatatgagactttcagttgtccattctgccct 147
|||||||||||| ||||||| |||| |||||||| |||||||
Sbjct: 282 gtgaaaacctcagatgagaccttcacttgtccatactgccct 323