Miyakogusa Predicted Gene
- Lj2g3v2574450.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2574450.1 tr|D7M7R3|D7M7R3_ARALL Histone H3 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_489722 PE=3 SV=1,90.3,0,Histone
H3,Histone H3; HISTONE H3,Histone H3; HISTONE_H3_2,Histone H3;
HISTONEH3,Histone H3; Histone,CUFF.39116.1
(405 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71487 UniRef100_A5BX39 Cluster: Histone H3; n=4; core... 281 2e-75
gnl|LJGI|TC60975 UniRef100_A5BX39 Cluster: Histone H3; n=4; core... 204 3e-52
gnl|LJGI|TC60899 homologue to UniRef100_Q00YS0 Cluster: Histones... 186 7e-47
gnl|LJGI|TC75127 homologue to UniRef100_A2Y8W0 Cluster: Histone ... 129 1e-29
gnl|LJGI|TC70534 UniRef100_P68428 Cluster: Histone H3.2; n=5; Ma... 123 9e-28
gnl|LJGI|TC65764 UniRef100_P68428 Cluster: Histone H3.2; n=5; Ma... 115 2e-25
gnl|LJGI|TC65076 UniRef100_P68428 Cluster: Histone H3.2; n=5; Ma... 109 1e-23
gnl|LJGI|AV413508 UniRef100_Q8RUV0 Cluster: Histone H3-D; n=1; G... 103 8e-22
gnl|LJGI|TC73033 UniRef100_P68428 Cluster: Histone H3.2; n=5; Ma... 103 8e-22
gnl|LJGI|FS340942 UniRef100_P84243 Cluster: Histone H3.3; n=34; ... 100 1e-20
gnl|LJGI|TC72069 UniRef100_P68428 Cluster: Histone H3.2; n=5; Ma... 94 8e-19
gnl|LJGI|TC77939 UniRef100_P68428 Cluster: Histone H3.2; n=5; Ma... 56 2e-07
>gnl|LJGI|TC71487 UniRef100_A5BX39 Cluster: Histone H3; n=4; core eudicotyledons|Rep:
Histone H3 - Vitis vinifera (Grape), complete
Length = 726
Score = 281 bits (142), Expect = 2e-75
Identities = 253/290 (87%)
Strand = Plus / Plus
Query: 100 ggtggagtgaagaagcctcataggtaccgtcctggaactgttgcactacgtgagattcga 159
|||||||| |||||||||||| | || ||||||||||||||||| || |||||||| ||
Sbjct: 171 ggtggagtcaagaagcctcatcgctatcgtcctggaactgttgctcttcgtgagatccgt 230
Query: 160 aagtaccagaagaccactgagctcctgatccggaagcaaccattccagcgtcttgttcgt 219
||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||
Sbjct: 231 aagtaccagaagagtactgagcttctgatccgcaagcttccattccagcgtcttgttcgt 290
Query: 220 gaaattgctcaggatttcaagacggacttgaggttccagagccatgctgttcttgctctt 279
||||| || |||||||||||||| || ||| | |||||||||||||||||||||||||||
Sbjct: 291 gaaatcgcacaggatttcaagactgatttgcgattccagagccatgctgttcttgctctt 350
Query: 280 caggaagctgctgaggcatacttggttggtttgttcgaagacacaaacctctgcgccata 339
||||||||||| ||||| ||| | || |||||||| || ||||| ||||| ||||| ||
Sbjct: 351 caggaagctgcggaggcgtaccttgtgggtttgtttgaggacaccaacctgtgcgcaatc 410
Query: 340 catgccaagaggattaccatcatgtccaaggatattcaactcgctcgccg 389
||||| |||||| | ||||||||| ||||||| |||||||| ||||||||
Sbjct: 411 catgctaagagggtgaccatcatgcccaaggacattcaactggctcgccg 460
>gnl|LJGI|TC60975 UniRef100_A5BX39 Cluster: Histone H3; n=4; core eudicotyledons|Rep:
Histone H3 - Vitis vinifera (Grape), complete
Length = 715
Score = 204 bits (103), Expect = 3e-52
Identities = 250/299 (83%)
Strand = Plus / Plus
Query: 73 gctgcacgaaagtctgttccaacaactggtggagtgaagaagcctcataggtaccgtcct 132
|||||| | ||||||| ||||| ||||||||||| ||||| || ||| | ||||| |||
Sbjct: 150 gctgcaaggaagtctgcaccaaccactggtggagtcaagaaaccccatcgataccgccct 209
Query: 133 ggaactgttgcactacgtgagattcgaaagtaccagaagaccactgagctcctgatccgg 192
||||||||||| || ||||| ||||| ||||| ||||||| ||||||||| ||||| ||
Sbjct: 210 ggaactgttgctctccgtgaaattcgtaagtatcagaagagtactgagctcttgatcagg 269
Query: 193 aagcaaccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggacttgagg 252
|||| || ||||| |||||||||||||||||||| || || |||||||| || ||||||
Sbjct: 270 aagctgcccttccaacgtcttgttcgtgaaattgcacaagacttcaagactgatttgagg 329
Query: 253 ttccagagccatgctgttcttgctcttcaggaagctgctgaggcatacttggttggtttg 312
||||||||||||||||| ||||||||||||||||||||||| || || | ||||| |||
Sbjct: 330 ttccagagccatgctgtacttgctcttcaggaagctgctgaagcttatcttgttggattg 389
Query: 313 ttcgaagacacaaacctctgcgccatacatgccaagaggattaccatcatgtccaagga 371
|| || || || || ||||| || || ||||| |||||| | ||||| ||| |||||||
Sbjct: 390 tttgaggataccaatctctgtgctatccatgctaagagggtgaccattatgcccaagga 448
>gnl|LJGI|TC60899 homologue to UniRef100_Q00YS0 Cluster: Histones H3 and H4; n=2;
Ostreococcus|Rep: Histones H3 and H4 - Ostreococcus
tauri, partial (86%)
Length = 849
Score = 186 bits (94), Expect = 7e-47
Identities = 250/302 (82%)
Strand = Plus / Plus
Query: 73 gctgcacgaaagtctgttccaacaactggtggagtgaagaagcctcataggtaccgtcct 132
|||||||| ||||||| ||||| |||||||| ||||||||||||||| | |||||||||
Sbjct: 137 gctgcacgtaagtctgcaccaactactggtggtgtgaagaagcctcatcgttaccgtcct 196
Query: 133 ggaactgttgcactacgtgagattcgaaagtaccagaagaccactgagctcctgatccgg 192
||||||||||| || ||||||||| | ||||||||||||| |||||||| |||||| ||
Sbjct: 197 ggaactgttgctcttcgtgagattaggaagtaccagaagagtactgagctgctgatcagg 256
Query: 193 aagcaaccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggacttgagg 252
|||| || |||||| | || |||||||| |||||||||||||||||||| || | |
Sbjct: 257 aagctccccttccagaggctggttcgtgagattgctcaggatttcaagactgatctccgt 316
Query: 253 ttccagagccatgctgttcttgctcttcaggaagctgctgaggcatacttggttggtttg 312
|||||||| |||||||| ||||| | || || ||||||||||||||| | ||||| ||
Sbjct: 317 ttccagagtcatgctgtgcttgcattgcaagaggctgctgaggcataccttgttggactg 376
Query: 313 ttcgaagacacaaacctctgcgccatacatgccaagaggattaccatcatgtccaaggat 372
|| || ||||| ||||| || ||||| || |||||| | | || |||||| ||||||||
Sbjct: 377 tttgaggacaccaacctgtgtgccattcacgccaagcgtgtcactatcatgcccaaggat 436
Query: 373 at 374
||
Sbjct: 437 at 438
>gnl|LJGI|TC75127 homologue to UniRef100_A2Y8W0 Cluster: Histone H3; n=1; Oryza
sativa Indica Group|Rep: Histone H3 - Oryza sativa
subsp. indica (Rice), partial (15%)
Length = 486
Score = 129 bits (65), Expect = 1e-29
Identities = 119/137 (86%)
Strand = Plus / Plus
Query: 253 ttccagagccatgctgttcttgctcttcaggaagctgctgaggcatacttggttggtttg 312
|||||||||||||||||||||||||||||||||||||| ||||| ||| | || ||||||
Sbjct: 94 ttccagagccatgctgttcttgctcttcaggaagctgcggaggcgtaccttgtgggtttg 153
Query: 313 ttcgaagacacaaacctctgcgccatacatgccaagaggattaccatcatgtccaaggat 372
|| || ||||| |||| ||||| || ||||| |||||| | ||||||||| |||||||
Sbjct: 154 tttgaggacacccacctgtgcgcaatccatgctaagagggtgaccatcatgcccaaggac 213
Query: 373 attcaactcgctcgccg 389
|||||||| ||||||||
Sbjct: 214 attcaactggctcgccg 230
>gnl|LJGI|TC70534 UniRef100_P68428 Cluster: Histone H3.2; n=5; Magnoliophyta|Rep:
Histone H3.2 - Triticum aestivum (Wheat), complete
Length = 734
Score = 123 bits (62), Expect = 9e-28
Identities = 227/282 (80%)
Strand = Plus / Plus
Query: 103 ggagtgaagaagcctcataggtaccgtcctggaactgttgcactacgtgagattcgaaag 162
|||||||||||||| || |||| | | |||||||||||||| || | ||||| | |||
Sbjct: 178 ggagtgaagaagccacacaggttcaggcctggaactgttgctctgagggagatcaggaag 237
Query: 163 taccagaagaccactgagctcctgatccggaagcaaccattccagcgtcttgttcgtgaa 222
|| ||||||| |||||||| ||||||||||||| || |||||||| | ||||||||
Sbjct: 238 tatcagaagagtactgagcttctgatccggaagcttccgttccagcgattggttcgtgag 297
Query: 223 attgctcaggatttcaagacggacttgaggttccagagccatgctgttcttgctcttcag 282
|| |||||||||||||||||||| | ||||| |||||| |||||| || ||||||
Sbjct: 298 atcgctcaggatttcaagacggatctcaggtttcagagcagtgctgtctcggcgcttcag 357
Query: 283 gaagctgctgaggcatacttggttggtttgttcgaagacacaaacctctgcgccatacat 342
||||| || ||||| ||| | ||||| ||||| ||||| || || ||||| ||||| ||
Sbjct: 358 gaagcagcggaggcttaccttgttggattgtttgaagataccaatctctgtgccattcac 417
Query: 343 gccaagaggattaccatcatgtccaaggatattcaactcgct 384
|||||||| | ||||| ||| | ||||| ||||||||||||
Sbjct: 418 gccaagagagtcaccattatgcctaaggacattcaactcgct 459
>gnl|LJGI|TC65764 UniRef100_P68428 Cluster: Histone H3.2; n=5; Magnoliophyta|Rep:
Histone H3.2 - Triticum aestivum (Wheat), complete
Length = 627
Score = 115 bits (58), Expect = 2e-25
Identities = 226/282 (80%)
Strand = Plus / Plus
Query: 103 ggagtgaagaagcctcataggtaccgtcctggaactgttgcactacgtgagattcgaaag 162
|||||||||||||| || |||| | | |||||||||||||| || | ||||| | |||
Sbjct: 174 ggagtgaagaagccacacaggttcaggcctggaactgttgctctgagggagatcaggaag 233
Query: 163 taccagaagaccactgagctcctgatccggaagcaaccattccagcgtcttgttcgtgaa 222
|| ||||||| |||||||| ||||||||||||| || |||||||| | ||||||||
Sbjct: 234 tatcagaagagtactgagcttctgatccggaagcttccgttccagcgattggttcgtgag 293
Query: 223 attgctcaggatttcaagacggacttgaggttccagagccatgctgttcttgctcttcag 282
|| |||||||||||||||||||| | ||||| |||||| |||||| || || |||
Sbjct: 294 atcgctcaggatttcaagacggatctcaggtttcagagcagtgctgtctcggcgctccag 353
Query: 283 gaagctgctgaggcatacttggttggtttgttcgaagacacaaacctctgcgccatacat 342
||||| || ||||| ||| | ||||| ||||| ||||| || || ||||| ||||| ||
Sbjct: 354 gaagcagcggaggcttaccttgttggattgtttgaagataccaatctctgtgccattcac 413
Query: 343 gccaagaggattaccatcatgtccaaggatattcaactcgct 384
|||||||| | ||||| ||| | ||||| ||||||||||||
Sbjct: 414 gccaagagagtcaccattatgcctaaggacattcaactcgct 455
>gnl|LJGI|TC65076 UniRef100_P68428 Cluster: Histone H3.2; n=5; Magnoliophyta|Rep:
Histone H3.2 - Triticum aestivum (Wheat), complete
Length = 628
Score = 109 bits (55), Expect = 1e-23
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 136 actgttgcactacgtgagattcgaaagtaccagaagaccactgagctcctgatccggaag 195
|||||||| || |||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 184 actgttgctctccgtgagatccgaaagtaccagaagagcactgagcttctgatccggaag 243
Query: 196 caaccattccagcgtcttgttcgtgaaattgctcaggatttcaagac 242
| || |||||||| || |||||||| || || ||||||||||||||
Sbjct: 244 cttccgttccagcgactggttcgtgagatcgcacaggatttcaagac 290
>gnl|LJGI|AV413508 UniRef100_Q8RUV0 Cluster: Histone H3-D; n=1; Glycine
tomentella|Rep: Histone H3-D - Glycine tomentella
(Woolly glycine), partial (88%)
Length = 250
Score = 103 bits (52), Expect = 8e-22
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 149 gtgagattcgaaagtaccagaagaccactgagctcctgatccggaagcaaccattccagc 208
||||||| || ||||||||||||| |||||||| |||||||| |||| ||||||||||
Sbjct: 151 gtgagatccgtaagtaccagaagagtactgagcttctgatccgcaagcttccattccagc 210
Query: 209 gtcttgttcgtgaaattgctcaggatttcaag 240
|||||||||||||||| || ||||||||||||
Sbjct: 211 gtcttgttcgtgaaatcgcacaggatttcaag 242
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 100 ggtggagtgaagaagcctcataggtaccgtcctggaactgttgc 143
|||||||| |||||||||||| | || |||||||||||||||||
Sbjct: 18 ggtggagtcaagaagcctcatcgctatcgtcctggaactgttgc 61
>gnl|LJGI|TC73033 UniRef100_P68428 Cluster: Histone H3.2; n=5; Magnoliophyta|Rep:
Histone H3.2 - Triticum aestivum (Wheat), complete
Length = 493
Score = 103 bits (52), Expect = 8e-22
Identities = 184/228 (80%)
Strand = Plus / Plus
Query: 160 aagtaccagaagaccactgagctcctgatccggaagcaaccattccagcgtcttgttcgt 219
||||||||||||| ||||||||| || |||||||||| || |||||| | || || |
Sbjct: 196 aagtaccagaagagcactgagcttctcatccggaagcttccgttccagaggctggtcaga 255
Query: 220 gaaattgctcaggatttcaagacggacttgaggttccagagccatgctgttcttgctctt 279
||||| ||||||||||||||||| || | | ||||||||| ||||||| ||||||
Sbjct: 256 gaaatcgctcaggatttcaagaccgatctccgattccagagcagtgctgtttctgctcta 315
Query: 280 caggaagctgctgaggcatacttggttggtttgttcgaagacacaaacctctgcgccata 339
|||||||| || ||||| ||| | ||||| ||||||| || || || ||||| || ||
Sbjct: 316 caggaagcggcagaggcttaccttgttggactgttcgaggataccaatctctgtgcgatt 375
Query: 340 catgccaagaggattaccatcatgtccaaggatattcaactcgctcgc 387
||||| ||||| |||| |||||| | |||||||||||||||||||||
Sbjct: 376 catgctaagagagttactatcatgcctaaggatattcaactcgctcgc 423
>gnl|LJGI|FS340942 UniRef100_P84243 Cluster: Histone H3.3; n=34; Bilateria|Rep:
Histone H3.3 - Homo sapiens (Human), complete
Length = 779
Score = 99.6 bits (50), Expect = 1e-20
Identities = 152/186 (81%)
Strand = Plus / Plus
Query: 163 taccagaagaccactgagctcctgatccggaagcaaccattccagcgtcttgttcgtgaa 222
||||||||| | |||||| | |||||||| |||| || |||||||| ||||||||||||
Sbjct: 226 taccagaagtctactgagttgctgatccgcaagctgcctttccagcgacttgttcgtgaa 285
Query: 223 attgctcaggatttcaagacggacttgaggttccagagccatgctgttcttgctcttcag 282
||||||||||| ||||| || ||| | | |||||||| |||| || ||||||||||
Sbjct: 286 attgctcaggacttcaaaactgaccttcgtttccagagtgctgctattggtgctcttcag 345
Query: 283 gaagctgctgaggcatacttggttggtttgttcgaagacacaaacctctgcgccatacat 342
||||| |||||| ||||||||||| ||||| |||||||| ||| | || ||||| ||
Sbjct: 346 gaagccagtgaggcttacttggttggcttgtttgaagacaccaacttgtgtgccattcac 405
Query: 343 gccaag 348
||||||
Sbjct: 406 gccaag 411
>gnl|LJGI|TC72069 UniRef100_P68428 Cluster: Histone H3.2; n=5; Magnoliophyta|Rep:
Histone H3.2 - Triticum aestivum (Wheat), complete
Length = 629
Score = 93.7 bits (47), Expect = 8e-19
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 148 cgtgagattcgaaagtaccagaagaccactgagctcctgatccggaagcaaccattccag 207
|||||||| |||||||||||||||| ||||||||| ||||||||||||| || ||||||
Sbjct: 217 cgtgagatccgaaagtaccagaagagcactgagcttctgatccggaagcttccgttccag 276
Query: 208 cgtcttgttcgtgaaattgctcaggatttcaagac 242
|| || || ||||| || || ||||||||||||||
Sbjct: 277 cgactcgtccgtgagatcgcacaggatttcaagac 311
>gnl|LJGI|TC77939 UniRef100_P68428 Cluster: Histone H3.2; n=5; Magnoliophyta|Rep:
Histone H3.2 - Triticum aestivum (Wheat), complete
Length = 672
Score = 56.0 bits (28), Expect = 2e-07
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 151 gagattcgaaagtaccagaagaccactgagctcctgatccggaagcaaccattccagcgt 210
||||| || ||||||||||||| ||||||||| || ||| |||||| ||||||||| |
Sbjct: 243 gagatccgtaagtaccagaagagcactgagcttctcatcaggaagcttccattccagagg 302
Query: 211 cttgttcgtgaaattgctcaggatttcaagac 242
|| || | || || |||||||||||||||||
Sbjct: 303 ctggtcagagagatcgctcaggatttcaagac 334