Miyakogusa Predicted Gene
- Lj2g3v2560080.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2560080.1 tr|Q5Z6N0|Q5Z6N0_ORYSJ Os06g0266800 protein
OS=Oryza sativa subsp. japonica GN=OJ1001_B06.38 PE=4
SV,75,2e-19,GASA,Gibberellin regulated protein,CUFF.39092.1
(291 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65077 similar to UniRef100_A2Q374 Cluster: Gibberelli... 569 e-162
gnl|LJGI|AV774158 similar to UniRef100_A2Q374 Cluster: Gibberell... 311 1e-84
gnl|LJGI|TC68447 homologue to UniRef100_A2Q374 Cluster: Gibberel... 157 4e-38
gnl|LJGI|TC68058 similar to UniRef100_Q2HRH3 Cluster: Gibberelli... 86 1e-16
gnl|LJGI|TC65214 similar to UniRef100_Q49RB3 Cluster: Gip1-like ... 70 8e-12
gnl|LJGI|TC61711 similar to UniRef100_A7PDM3 Cluster: Chromosome... 70 8e-12
gnl|LJGI|TC60938 similar to UniRef100_Q49RB3 Cluster: Gip1-like ... 70 8e-12
gnl|LJGI|TC76476 similar to UniRef100_Q2HRH3 Cluster: Gibberelli... 68 3e-11
gnl|LJGI|TC64406 similar to UniRef100_Q49RB3 Cluster: Gip1-like ... 54 5e-07
>gnl|LJGI|TC65077 similar to UniRef100_A2Q374 Cluster: Gibberellin regulated protein;
n=1; Medicago truncatula|Rep: Gibberellin regulated
protein - Medicago truncatula (Barrel medic), partial
(86%)
Length = 671
Score = 569 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Plus
Query: 1 atggcaggacgttcctacagctccttcttgattgccatctctctgcttgttttggttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggcaggacgttcctacagctccttcttgattgccatctctctgcttgttttggttaca 157
Query: 61 ttctctaatgtggcagaggcttatggaagtgcaaaacttcgtccttcagattgtaaacca 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttctctagtgtggcagaggcttatggaagtgcaaaacttcgtccttcagattgtaaacca 217
Query: 121 aagtgcacataccgttgctctgcaacttcacacaagaagccatgcatgtttttctgccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aagtgcacataccgttgctctgcaacttcacacaagaagccatgcatgtttttctgccaa 277
Query: 181 aagtgctgcgccaaatgcctctgcgttcctcctggtgtgtatggcaacaaggaagtctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagtgctgcgccaaatgcctctgcgttcctcctggtgtgtatggcaacaaggaagtctgc 337
Query: 241 ccttgctacaacagctggaagaccaaggaaggagggcccaaatgcccttga 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccttgctacaacagctggaagaccaaggaaggagggcccaaatgcccttga 388
>gnl|LJGI|AV774158 similar to UniRef100_A2Q374 Cluster: Gibberellin regulated protein;
n=1; Medicago truncatula|Rep: Gibberellin regulated
protein - Medicago truncatula (Barrel medic), partial
(62%)
Length = 477
Score = 311 bits (157), Expect = 1e-84
Identities = 178/185 (96%)
Strand = Plus / Minus
Query: 107 cagattgtaaaccaaagtgcacataccgttgctctgcaacttcacacaagaagccatgca 166
|||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 cagattctaaaccaagctccacatacccttgctctgcaacttcacacaagaagccatgca 312
Query: 167 tgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctcctggtgtgtatggca 226
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtttttctgcctaaagtgctgcgccaaatgcctctgcgttcctcctggtgtgtatggca 252
Query: 227 acaaggaagtctgcccttgctacaacagctggaagaccaaggaaggagggcccaaatgcc 286
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaaggaagtctgcccttgctactacagctggaagaccaaggaaggagggcccaaatgcc 192
Query: 287 cttga 291
|||||
Sbjct: 191 cttga 187
>gnl|LJGI|TC68447 homologue to UniRef100_A2Q374 Cluster: Gibberellin regulated
protein; n=1; Medicago truncatula|Rep: Gibberellin
regulated protein - Medicago truncatula (Barrel medic),
partial (14%)
Length = 579
Score = 157 bits (79), Expect = 4e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 atggcaggacgttcctacagctccttcttgattgccatctctctgcttgttttggttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 atggcaggacgttcctacagctccttcttgattgccatctctctgcttgttttggttaca 141
Query: 61 ttctctaatgtggcagagg 79
|||||||||||||||||||
Sbjct: 142 ttctctaatgtggcagagg 160
>gnl|LJGI|TC68058 similar to UniRef100_Q2HRH3 Cluster: Gibberellin regulated protein;
n=1; Medicago truncatula|Rep: Gibberellin regulated
protein - Medicago truncatula (Barrel medic), partial
(96%)
Length = 711
Score = 85.7 bits (43), Expect = 1e-16
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 152 acaagaagccatgcatgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctc 211
||||||| || ||| |||| |||||| | |||||||| ||||| ||| | || || ||||
Sbjct: 282 acaagaaaccgtgcttgttcttctgcaataagtgctgtgccaagtgcttgtgtgtgcctc 341
Query: 212 ctggtgtgtatggcaacaaggaagtctgcccttgctacaacagctggaagaccaa 266
||||| | |||||||||||| | ||||||||||||||||||| |||||| |||||
Sbjct: 342 ctggtctttatggcaacaagcaggtctgcccttgctacaacaactggaaaaccaa 396
>gnl|LJGI|TC65214 similar to UniRef100_Q49RB3 Cluster: Gip1-like protein; n=1;
Populus tomentosa|Rep: Gip1-like protein - Populus
tomentosa (Chinese white poplar), partial (94%)
Length = 772
Score = 69.9 bits (35), Expect = 8e-12
Identities = 104/127 (81%)
Strand = Plus / Plus
Query: 163 tgcatgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctcctggtgtgtat 222
||||||||||||||||||||||||||| |||||||| || || || ||| |||
Sbjct: 324 tgcatgtttttctgccaaaagtgctgcaggtcttgcctctgtgtgcccccgggttattat 383
Query: 223 ggcaacaaggaagtctgcccttgctacaacagctggaagaccaaggaaggagggcccaaa 282
|| ||||| | || |||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 384 gggaacaaagctgtgtgcccttgctacaacaactggaagaccaagagaggaggtcccaag 443
Query: 283 tgccctt 289
|||||||
Sbjct: 444 tgccctt 450
>gnl|LJGI|TC61711 similar to UniRef100_A7PDM3 Cluster: Chromosome chr17 scaffold_12,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_12, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 726
Score = 69.9 bits (35), Expect = 8e-12
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 157 aagccatgcatgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctcctggt 216
||||| |||||||| ||||||||||| ||||| ||||| || | || || ||||||||
Sbjct: 272 aagccctgcatgttcttctgccaaaaatgctgtgccaagtgtttgtgtgtccctcctggc 331
Query: 217 gtgtatggcaacaaggaagtctgcccttgctacaacagctggaagaccaaggaaggaggg 276
||||| |||||| || ||||| |||||||||| ||||||||||||| |||||
Sbjct: 332 tactatgggaacaagtctgtgtgcccctgctacaacaactggaagaccaagcgtggagga 391
Query: 277 cccaaatgcccttga 291
|||||||||||||||
Sbjct: 392 cccaaatgcccttga 406
>gnl|LJGI|TC60938 similar to UniRef100_Q49RB3 Cluster: Gip1-like protein; n=1;
Populus tomentosa|Rep: Gip1-like protein - Populus
tomentosa (Chinese white poplar), partial (94%)
Length = 714
Score = 69.9 bits (35), Expect = 8e-12
Identities = 104/127 (81%)
Strand = Plus / Plus
Query: 163 tgcatgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctcctggtgtgtat 222
||||||||||||||||||||||||||| |||||||| || || || ||| |||
Sbjct: 271 tgcatgtttttctgccaaaagtgctgcaggtcttgcctctgtgtgcccccgggttattat 330
Query: 223 ggcaacaaggaagtctgcccttgctacaacagctggaagaccaaggaaggagggcccaaa 282
|| ||||| | || |||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 331 gggaacaaagctgtgtgcccttgctacaacaactggaagaccaagagaggaggtcccaag 390
Query: 283 tgccctt 289
|||||||
Sbjct: 391 tgccctt 397
>gnl|LJGI|TC76476 similar to UniRef100_Q2HRH3 Cluster: Gibberellin regulated protein;
n=1; Medicago truncatula|Rep: Gibberellin regulated
protein - Medicago truncatula (Barrel medic), partial
(50%)
Length = 571
Score = 67.9 bits (34), Expect = 3e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 167 tgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctcctggtgtgtatggca 226
|||| |||||||| |||||||| ||| | ||| | || || ||||||||| | |||||||
Sbjct: 298 tgttcttctgccataagtgctgtgcccagtgcttgtgtgtgcctcctggtctttatggca 357
Query: 227 acaaggaagtctgcccttgctacaac 252
||||| | ||||||||||||||||||
Sbjct: 358 acaagcaggtctgcccttgctacaac 383
>gnl|LJGI|TC64406 similar to UniRef100_Q49RB3 Cluster: Gip1-like protein; n=1;
Populus tomentosa|Rep: Gip1-like protein - Populus
tomentosa (Chinese white poplar), partial (95%)
Length = 662
Score = 54.0 bits (27), Expect = 5e-07
Identities = 108/135 (80%)
Strand = Plus / Plus
Query: 157 aagccatgcatgtttttctgccaaaagtgctgcgccaaatgcctctgcgttcctcctggt 216
||||| |||||||||||||| || ||||||||| || ||||| || || ||||| ||
Sbjct: 290 aagccctgcatgtttttctgtcagaagtgctgcaggaagtgcctgtgtgtacctccgggg 349
Query: 217 gtgtatggcaacaaggaagtctgcccttgctacaacagctggaagaccaaggaaggaggg 276
||||| ||||| | || |||||||||||||||| |||||||||| | |||||||
Sbjct: 350 tattatgggaacaaagctgtgtgcccttgctacaacaactggaagacccaacaaggagga 409
Query: 277 cccaaatgcccttga 291
|| || |||||||||
Sbjct: 410 ccaaagtgcccttga 424