Miyakogusa Predicted Gene

Lj2g3v2560000.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2560000.1 Non Chatacterized Hit- tr|A5BLU3|A5BLU3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.09,2e-19,seg,NULL; "Winged helix" DNA-binding domain,NULL;
H15,Histone H1/H5; Linker_histone,Histone H1/H5; A,CUFF.39083.1
         (534 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65867 similar to UniRef100_Q42461 Cluster: High mobil...  1059   0.0  
gnl|LJGI|TC60986 similar to UniRef100_Q42461 Cluster: High mobil...   131   5e-30

>gnl|LJGI|TC65867 similar to UniRef100_Q42461 Cluster: High mobility group protein;
           n=1; Canavalia gladiata|Rep: High mobility group protein
           - Canavalia gladiata (Sword bean) (Japanese jack bean),
           partial (94%)
          Length = 887

 Score = 1059 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccactgaagaggttaataaaccttcatcactccctccctaccctgagatgataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atggccactgaagaggttaataaaccttcatcactccctccctaccctgagatgataatg 182

                                                                       
Query: 61  gaagcactggaatcactgaacaaacccaatggatccaacaagtcagcaatatcaagctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaagcactggaatcactgaacaaacccaatggatccaacaagtcagcaatatcaagctat 242

                                                                       
Query: 121 atagaatccaatcatggtgaattgccagaaactcatgcaactcttctcattcttcacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atagaatccaatcatggtgaattgccagaaactcatgcaactcttctcattcttcacctc 302

                                                                       
Query: 181 aaccagatgaaagagagtggggagcttgtgttcttgaacaacaactacatgaagcctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaccagatgaaagagagtggggagcttgtgttcttgaacaacaactacatgaagcctgac 362

                                                                       
Query: 241 ccaaatgccccacctaagaggggacgtggcaggccacccaagcccaaggctgctctgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccaaatgccccacctaagaggggacgtggcaggccacccaagcccaaggctgctctgcct 422

                                                                       
Query: 301 ctagacactgtggtggccccaccaaggcccaggggtcgtccaccaaaggatcctaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctagacactgtggtggccccaccaaggcccaggggtcgtccaccaaaggatcctaatgct 482

                                                                       
Query: 361 gagccaaagcccaaggtggtgtcaattgcaagtggcaggcctagaggccggcccaagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagccaaagcccaaggtggtgtcaattgcaagtggcaggcctagaggccggcccaagaag 542

                                                                       
Query: 421 gttgcccggtcggctgcggcggcgtctccgggcgctgctgtttctagtgggaggcccagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gttgcccggtcggctgcggcggcgtctccgggcgctgctgtttctagtgggaggcccagg 602

                                                                 
Query: 481 gggaggcctcctaaggtgaagcctcaattgactgaagtcagcgttgaatcatag 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gggaggcctcctaaggtgaagcctcaattgactgaagtcagcgttgaatcatag 656


>gnl|LJGI|TC60986 similar to UniRef100_Q42461 Cluster: High mobility group protein;
           n=1; Canavalia gladiata|Rep: High mobility group protein
           - Canavalia gladiata (Sword bean) (Japanese jack bean),
           partial (89%)
          Length = 1190

 Score =  131 bits (66), Expect = 5e-30
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                       
Query: 175 cacctcaaccagatgaaagagagtggggagcttgtgttcttgaacaacaactacatgaag 234
           ||||||||||||||||| || ||||| ||| |||||||||| || |||||||||||||||
Sbjct: 275 cacctcaaccagatgaaggacagtggtgagattgtgttcttcaagaacaactacatgaag 334

                                                             
Query: 235 cctgacccaaatgccccacctaagaggggacgtggcaggccacccaagcc 284
           |||||||||||||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 335 cctgacccaaatgccccaccaaagagagggcgtggaaggccacctaagcc 384



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 469 gggaggcccagggggaggcctcctaaggtgaagcctcaattgactgaagtcagcgttgaa 528
           |||||||| ||||| |||||||||||||||||||||||  |||||||||| || ||||||
Sbjct: 569 gggaggccaaggggtaggcctcctaaggtgaagcctcagatgactgaagtgagtgttgaa 628



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccactgaagaggttaataaaccttcatcactccctccctaccctgagatgataatg 60
           ||||| ||||| ||| |||| |||||||| || || ||||| || |||||||||||||||
Sbjct: 104 atggcaactgaggagcttaacaaaccttcttctcttcctccatatcctgagatgataatg 163

                 
Query: 61  gaagca 66
            |||||
Sbjct: 164 aaagca 169



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 319 ccaccaaggcccaggggtcgtccaccaaaggatcctaatgct 360
           ||||||||||| |||||||| || |||||||| |||||||||
Sbjct: 428 ccaccaaggcctaggggtcgccctccaaaggaccctaatgct 469