Miyakogusa Predicted Gene

Lj2g3v2536470.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2536470.1 Non Chatacterized Hit- tr|C0P634|C0P634_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,47.79,6e-19,ZINC_FINGER_C2H2_2,Zinc finger, C2H2;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ZFP4 (ZINC FINGER
PROTEI,CUFF.39054.1
         (775 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66456 similar to UniRef100_A7Q919 Cluster: Chromosome...    74   1e-12
gnl|LJGI|TC59088 similar to UniRef100_A7Q919 Cluster: Chromosome...    72   6e-12

>gnl|LJGI|TC66456 similar to UniRef100_A7Q919 Cluster: Chromosome chr9 scaffold_65,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr9 scaffold_65, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 1170

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 130/161 (80%)
 Strand = Plus / Plus

                                                                       
Query: 325 ttctcttgcaattactgtcagagaaagttcttcagctctcaggctcttggggggcaccag 384
           |||||||| ||||||||   | |||| ||||||||||| || || || ||||| ||||||
Sbjct: 403 ttctcttgtaattactgcaggcgaaaattcttcagctcacaagcgctggggggtcaccag 462

                                                                       
Query: 385 aatgcacacaagagagagaggacattagccaaaagggccatgagaatggggtttttctct 444
           ||||| ||||| || ||||||||  | || ||  |||| ||| |||||||| | ||| ||
Sbjct: 463 aatgctcacaaaagggagaggacgatggcgaagcgggcgatgcgaatggggatgttcact 522

                                                    
Query: 445 gaaaggtatgcaagtctagcatctctccctcttcatggttc 485
           ||||||||||| ||  | |||||||| ||||| ||||||||
Sbjct: 523 gaaaggtatgctagcttggcatctctacctctccatggttc 563


>gnl|LJGI|TC59088 similar to UniRef100_A7Q919 Cluster: Chromosome chr9 scaffold_65,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr9 scaffold_65, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 1227

 Score = 71.9 bits (36), Expect = 6e-12
 Identities = 87/104 (83%)
 Strand = Plus / Plus

                                                                       
Query: 316 ccaagagtcttctcttgcaattactgtcagagaaagttcttcagctctcaggctcttggg 375
           |||||||| ||||||||||| ||||| || || || |||| ||| || || || ||||||
Sbjct: 365 ccaagagtgttctcttgcaactactgccataggaaattctacagttcacaagcacttggg 424

                                                       
Query: 376 gggcaccagaatgcacacaagagagagaggacattagccaaaag 419
           || ||||| |||||||||||||| |||||| || |||| |||||
Sbjct: 425 ggtcaccaaaatgcacacaagagggagaggtcaatagcaaaaag 468