Miyakogusa Predicted Gene
- Lj2g3v2326310.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2326310.1 tr|B9MXY2|B9MXY2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_921060 PE=4
SV=1,40.68,8e-16,APO,APO domain; APO_RNA-bind,APO domain; APO3
(ACCUMULATION OF PHOTOSYSTEM ONE 3),NULL; EUKARYOTIC T,CUFF.38856.1
(1287 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61863 similar to UniRef100_A7PDB4 Cluster: Chromosome... 1935 0.0
gnl|LJGI|AW163946 similar to UniRef100_A7PK14 Cluster: Chromosom... 56 6e-07
>gnl|LJGI|TC61863 similar to UniRef100_A7PDB4 Cluster: Chromosome chr17 scaffold_12,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_12, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 1062
Score = 1935 bits (976), Expect = 0.0
Identities = 976/976 (100%)
Strand = Plus / Plus
Query: 1 atgcgcgccaccgcaatctcctcgaagctcccacttctgacgcgactgacccaccgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 atgcgcgccaccgcaatctcctcgaagctcccacttctgacgcgactgacccaccgcctc 146
Query: 61 aacgcggccctctccttctgctcagagacatggccggcggcggacgttcccgatgatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aacgcggccctctccttctgctcagagacatggccggcggcggacgttcccgatgatgac 206
Query: 121 ggactcccatacttcgacgtgccgaggcctcgccggagtaaggcggagaggaagccgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggactcccatacttcgacgtgccgaggcctcgccggagtaaggcggagaggaagccgtac 266
Query: 181 gtgacgccgatgaaggttctgatagagagggcgaaggcggagagagaagcaaggaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgacgccgatgaaggttctgatagagagggcgaaggcggagagagaagcaaggaaggca 326
Query: 241 gagccttgtagggttctggaagaagctcctgagaacgggttgttggtgccggagctcgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gagccttgtagggttctggaagaagctcctgagaacgggttgttggtgccggagctcgtt 386
Query: 301 gaggtcgctcaccgagtttatcaagctcaccggactctgctctctgggctgagtcagctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaggtcgctcaccgagtttatcaagctcaccggactctgctctctgggctgagtcagctc 446
Query: 361 gtccgagtcatccccgttttgcgttgtgggttttgtgatgaggttcacattggttttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtccgagtcatccccgttttgcgttgtgggttttgtgatgaggttcacattggttttgtg 506
Query: 421 ggtcatgaaattcgaacatgtactggaccacagagtcgcttgcggagtgcaatgcatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtcatgaaattcgaacatgtactggaccacagagtcgcttgcggagtgcaatgcatgtt 566
Query: 481 tggagaaggggaggggttcgaaacgtgatcttcttcccaagatgctttcatctctatgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggagaaggggaggggttcgaaacgtgatcttcttcccaagatgctttcatctctatgac 626
Query: 541 cgagttggtaagccaagagttgggcatgatgagaggttcagtgttcctcgtatccctgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cgagttggtaagccaagagttgggcatgatgagaggttcagtgttcctcgtatccctgcc 686
Query: 601 atagttgaactctgtatacaagcgggtctagaccttgaaaagtatcccaccaagagaaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atagttgaactctgtatacaagcgggtctagaccttgaaaagtatcccaccaagagaaga 746
Query: 661 accaaacctgtatactgtattgagggaagaattgcagattttgaatccgttgctgaagag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 accaaacctgtatactgtattgagggaagaattgcagattttgaatccgttgctgaagag 806
Query: 721 gatgaaactaaaagaaaatgttctgttgaaaatttgaataactttgtgggttcatcctct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gatgaaactaaaagaaaatgttctgttgaaaatttgaataactttgtgggttcatcctct 866
Query: 781 attttgacaaagcctgtagagaaggttcacaatttaatggtgaacaacataagcaatctg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 attttgacaaagcctgtagagaaggttcacaatttaatggtgaacaacataagcaatctg 926
Query: 841 gatcagttgagtgatgaagataggaacaaattaagggatttgggtagacaaacactggac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 gatcagttgagtgatgaagataggaacaaattaagggatttgggtagacaaacactggac 986
Query: 901 tcctggtttgagatgacatcaggcgcacagaagatcatggagaagtatgttgtgaatatg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tcctggtttgagatgacatcaggcgcacagaagatcatggagaagtatgttgtgaatatg 1046
Query: 961 tgtggatattgtcctg 976
||||||||||||||||
Sbjct: 1047 tgtggatattgtcctg 1062
>gnl|LJGI|AW163946 similar to UniRef100_A7PK14 Cluster: Chromosome chr15 scaffold_19,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_19, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 446
Score = 56.0 bits (28), Expect = 6e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1144 ctgaagagatattatggtaaggctccagctgt 1175
||||||||||||||||||||| ||||||||||
Sbjct: 181 ctgaagagatattatggtaagactccagctgt 212