Miyakogusa Predicted Gene

Lj2g3v2280600.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2280600.1 tr|G7JZJ8|G7JZJ8_MEDTR Chromodomain
helicase-DNA-binding protein OS=Medicago truncatula
GN=MTR_5g071,38,4e-18,seg,NULL; PHD zinc finger,Zinc finger, PHD-type;
PHD,Zinc finger, PHD-finger; SUBFAMILY NOT NAMED,NU,CUFF.38792.1
         (3447 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AI967555 similar to UniRef100_A7NYD4 Cluster: Chromosom...    98   4e-19

>gnl|LJGI|AI967555 similar to UniRef100_A7NYD4 Cluster: Chromosome chr6 scaffold_3,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr6 scaffold_3, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (9%)
          Length = 414

 Score = 97.6 bits (49), Expect = 4e-19
 Identities = 245/309 (79%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2752 cttcttgagagaaatgatgaaatgattagtgtggcaactattagggtctacggagataag 2811
            ||||| ||||||||||||||| | || ||||| |||||||||||| | |  ||| | |||
Sbjct: 93   cttctcgagagaaatgatgaagtaatcagtgttgcaactattaggatatttggacagaag 152

                                                                        
Query: 2812 gtagcagaagtaccgctagttggaacaagattccagtatcgtcgacatggaatgtgtcgc 2871
            ||||| ||| | || || || |  || ||| | |||||||| || ||||| |||||||| 
Sbjct: 153  gtagctgaaatgcctcttgtagctaccagaattcagtatcgccggcatgggatgtgtcgt 212

                                                                        
Query: 2872 attttaatgaatgagcttgaaaagaagctcatgcaattgggagtggagaggcttgttttg 2931
             |||| ||| |||| ||||| |||||||||| | || |||||||||||||||| || |||
Sbjct: 213  gttttgatggatgaacttgagaagaagctcaaggaactgggagtggagaggctggtcttg 272

                                                                        
Query: 2932 cctgctgttccgggcgtgctaggaacgtggaccggctcttttggctttgtagagatgaca 2991
            |||||||| || || ||| | | ||| ||||||   || || |||||||| |||||||| 
Sbjct: 273  cctgctgtaccaggggtggtggaaacatggaccaattcattcggctttgtggagatgacg 332

                                                                        
Query: 2992 aattttgagagatcacaatttctggactatactttcctagactttcaggataccatcatg 3051
            || |  ||| |||| || ||| ||||||||  |||||| ||||| || |  |||||||||
Sbjct: 333  aactcagagcgatcgcagtttgtggactat-gtttccttgacttccaaggaaccatcatg 391

                     
Query: 3052 tgccagaag 3060
            |||||||||
Sbjct: 392  tgccagaag 400