Miyakogusa Predicted Gene
- Lj2g3v2246170.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2246170.1 Non Chatacterized Hit- tr|I1JHC2|I1JHC2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.49,0,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; RNA-BINDING PROTEIN,NULL; no
description,Nucleo,CUFF.38759.1
(1188 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS336599 similar to UniRef100_A7NYH5 Cluster: Chromosom... 991 0.0
gnl|LJGI|DC593379 similar to UniRef100_A7NYH5 Cluster: Chromosom... 488 e-137
gnl|LJGI|TC80600 472 e-132
>gnl|LJGI|FS336599 similar to UniRef100_A7NYH5 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 754
Score = 991 bits (500), Expect = 0.0
Identities = 500/500 (100%)
Strand = Plus / Plus
Query: 1 atgaacccattaaccctagtgaagcgaatccagaacatcaattcaaaggaagcagcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atgaacccattaaccctagtgaagcgaatccagaacatcaattcaaaggaagcagcactt 314
Query: 61 ggcatcggtgaagaagcttcatggcacgccaagtacaaagattcagcttatgtgttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggcatcggtgaagaagcttcatggcacgccaagtacaaagattcagcttatgtgttcatt 374
Query: 121 ggtggcattccctttgatctcactgagggtgatctcctcgctgtttttgctcaatatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtggcattccctttgatctcactgagggtgatctcctcgctgtttttgctcaatatgga 434
Query: 181 gaggttgttgatgttaatcttgtgagggacaaaggtactggcaaatcattgggttatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaggttgttgatgttaatcttgtgagggacaaaggtactggcaaatcattgggttatgct 494
Query: 241 ttccttgcatatgaagatcaaagaagcacaaatcttgctgtggataatctaaatggagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttccttgcatatgaagatcaaagaagcacaaatcttgctgtggataatctaaatggagca 554
Query: 301 cagattttaggtagaattattagggtggatcatcgtgataagtatacgaagaaggaagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cagattttaggtagaattattagggtggatcatcgtgataagtatacgaagaaggaagag 614
Query: 361 gaagatgaagagacagagaagcagaatcgggaggcacgcggtgtttgccgacaattccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaagatgaagagacagagaagcagaatcgggaggcacgcggtgtttgccgacaattccaa 674
Query: 421 agaggtgaatgtactcgtggtgctagctgcaaattttctcacgatgagcaaagagctgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agaggtgaatgtactcgtggtgctagctgcaaattttctcacgatgagcaaagagctgca 734
Query: 481 aacactggttggggtcgtga 500
||||||||||||||||||||
Sbjct: 735 aacactggttggggtcgtga 754
>gnl|LJGI|DC593379 similar to UniRef100_A7NYH5 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 578
Score = 488 bits (246), Expect = e-137
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 1 atgaacccattaaccctagtgaagcgaatccagaacatcaattcaaaggaagcagcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgaacccattaaccctagtgaagcgaatccagaacatcaattcaaaggaagcagcactt 392
Query: 61 ggcatcggtgaagaagcttcatggcacgccaagtacaaagattcagcttatgtgttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggcatcggtgaagaagcttcatggcacgccaagtacaaagattcagcttatgtgttcatt 452
Query: 121 ggtggcattccctttgatctcactgagggtgatctcctcgctgtttttgctcaatatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggtggcattccctttgatctcactgagggtgatctcctcgctgtttttgctcaatatgga 512
Query: 181 gaggttgttgatgttaatcttgtgagggacaaaggtactggcaaatcattgggttatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaggttgttgatgttaatcttgtgagggacaaaggtactggcaaatcattgggttatgct 572
Query: 241 ttcctt 246
||||||
Sbjct: 573 ttcctt 578
>gnl|LJGI|TC80600
Length = 560
Score = 472 bits (238), Expect = e-132
Identities = 308/325 (94%), Gaps = 5/325 (1%)
Strand = Plus / Plus
Query: 869 atcatagaagggaagccaagaggtcaacaaatccagatgatgctgagtttgagccccagt 928
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 1 atcatagaagggaanccaagaggtcaacgaatccagatgatgctgagtttgagcccccgt 60
Query: 929 ctagagattctgatataagggaagagaaaagatccaggaggcatgatgatgatgattttg 988
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 ctagagattctgatataagggaagagaaaagatcccggaggcatgatgatgatgattttg 120
Query: 989 gaagtaagtcacgacaaactcatagtaacagggaagataggagaccgagaaagcacactg 1048
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 121 gaagtaagtcacgaccaactcatagtaaccgggaagataggagaccgagaaagcaccctg 180
Query: 1049 aagatgaatctgcagcaaggtcaagaggagattatgataggaagcaagataacagatcat 1108
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct: 181 aagatgaatctgcagcaaggtccagaggagattatgataggaagccagataaccgatcat 240
Query: 1109 atagagatgatactgat-cgat-cagaa-ccaaaagcaagata-cggttatga-caggag 1163
||||||||||||||||| |||| ||||| |||||||| ||||| ||||||||| | ||||
Sbjct: 241 atagagatgatactgatccgatccagaacccaaaagccagataccggttatgacccggag 300
Query: 1164 agaagagaagaggtcgagtaggtga 1188
|||||||||||||||||||||||||
Sbjct: 301 agaagagaagaggtcgagtaggtga 325