Miyakogusa Predicted Gene

Lj2g3v2234090.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2234090.1 tr|F6KKF6|F6KKF6_MALDO Transcriptional regulator
superman OS=Malus domestica GN=SUP5a PE=2 SV=1,38.46,1e-18,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no description,Zinc finger
C2H2-type/integrase DNA-,gene.g43153.t1.1
         (547 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69775 similar to UniRef100_A5JUQ4 Cluster: C2H2 zinc ...    52   4e-06

>gnl|LJGI|TC69775 similar to UniRef100_A5JUQ4 Cluster: C2H2 zinc finger protein; n=1;
           Glycine max|Rep: C2H2 zinc finger protein - Glycine max
           (Soybean), partial (36%)
          Length = 1168

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 81  ttgtacattctgcaagagaggcttcacaaatgctcaggctttagggggtcacatgaatat 140
           |||||| || ||||||||||| ||| ||||||| || ||  |||| || |||||||||||
Sbjct: 132 ttgtaccttttgcaagagagggttctcaaatgcacaagcactaggtggccacatgaatat 191

                                 
Query: 141 tcataggaaggacagagccaag 162
            ||||| | ||| |||||||||
Sbjct: 192 ccatagaagggatagagccaag 213