Miyakogusa Predicted Gene

Lj2g3v2183310.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2183310.3 tr|B9I2B5|B9I2B5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_661646
PE=4,65.89,3e-19,seg,NULL,CUFF.38710.3
         (408 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC594349 similar to UniRef100_A7QES0 Cluster: Chromosom...   373   e-103
gnl|LJGI|TC62277 similar to UniRef100_A7QES0 Cluster: Chromosome...   170   4e-42

>gnl|LJGI|DC594349 similar to UniRef100_A7QES0 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 575

 Score =  373 bits (188), Expect = e-103
 Identities = 188/188 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcacacccgtatacgccctgaaacagcccccgtaactataccgcatccaatgatggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgcacacccgtatacgccctgaaacagcccccgtaactataccgcatccaatgatggga 447

                                                                       
Query: 61  aaaggctccagaaatctttctcctaatttttctgatccaagtagaaattctttgcctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaaggctccagaaatctttctcctaatttttctgatccaagtagaaattctttgcctcct 507

                                                                       
Query: 121 ttgtctcccagaaggaatgatacttcttcatcacaggagtctccatctggagtcagatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgtctcccagaaggaatgatacttcttcatcacaggagtctccatctggagtcagatca 567

                   
Query: 181 ttcaggaa 188
           ||||||||
Sbjct: 568 ttcaggaa 575


>gnl|LJGI|TC62277 similar to UniRef100_A7QES0 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (21%)
          Length = 880

 Score =  170 bits (86), Expect = 4e-42
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                       
Query: 319 tttcaggatgacttggatgatggcgacttttcctgtccttttgatgttgatgatgttgac 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 9   tttcaggatgacttggatgatggcgacttttcctgtccttttgatgttgatgatgttgat 68

                                         
Query: 379 ccaccagatgttctgtccagtcataatgtg 408
           ||||||||||||||||||||||||||||||
Sbjct: 69  ccaccagatgttctgtccagtcataatgtg 98