Miyakogusa Predicted Gene

Lj2g3v2183230.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2183230.1 Non Chatacterized Hit- tr|F2TYR0|F2TYR0_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,41.46,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Peptidase_C78,Peptidase C78, ubiquitin fold modifie,CUFF.38695.1
         (1299 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP068668 weakly similar to UniRef100_A9TA72 Cluster: Pr...    76   6e-13

>gnl|LJGI|BP068668 weakly similar to UniRef100_A9TA72 Cluster: Predicted protein; n=1;
            Physcomitrella patens subsp. patens|Rep: Predicted
            protein - Physcomitrella patens subsp. patens, partial
            (16%)
          Length = 386

 Score = 75.8 bits (38), Expect = 6e-13
 Identities = 171/214 (79%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1087 caatataatctcctcattctggatcctggccatagaacggctgctctagagagaacactt 1146
            ||||||||||||||  || |||| ||||  ||||| ||||||||||| || ||| |||| 
Sbjct: 372  caatataatctccttgttttggaccctgctcatagtacggctgctcttgaaagatcacta 313

                                                                        
Query: 1147 aaggagaaagttggatggcagagatatgtaaaaagaggagtgcacactctgaggagaaaa 1206
                |||||||||||||||||| |    ||||||| ||| |||| || |||| ||    |
Sbjct: 312  cgacagaaagttggatggcagaaactcataaaaaggggaatgcatacactgaagaagcca 253

                                                                        
Query: 1207 caataccagctgtgttatgttgatcctggaatagccaatgagaaggagatggaacaactc 1266
            |||||||||||||||||||||||||||||||| ||    ||| ||||||| ||| |||||
Sbjct: 252  caataccagctgtgttatgttgatcctggaattgctggagaggaggagatagaaaaactc 193

                                              
Query: 1267 aagacaatggatagtg-ttttccttgaactttag 1299
            ||||| || || |||| | ||||||||| |||||
Sbjct: 192  aagaccattgacagtgctcttccttgaaatttag 159