Miyakogusa Predicted Gene
- Lj2g3v2171850.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2171850.1 Non Chatacterized Hit- tr|I1JH54|I1JH54_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18679
PE,80.43,0,seg,NULL; DEAD-like helicases superfamily,Helicase,
superfamily 1/2, ATP-binding domain; PHD zinc fi,CUFF.38803.1
(5004 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC593101 similar to UniRef100_Q7XJP0 Cluster: SNF2/SWI2... 515 e-145
gnl|LJGI|TC76133 similar to UniRef100_A7Q3Y7 Cluster: Chromosome... 430 e-119
gnl|LJGI|DC598170 similar to UniRef100_Q7XJP0 Cluster: SNF2/SWI2... 404 e-111
gnl|LJGI|BW596395 212 2e-53
>gnl|LJGI|DC593101 similar to UniRef100_Q7XJP0 Cluster: SNF2/SWI2 family global
transcription factor; n=1; Arabidopsis thaliana|Rep:
SNF2/SWI2 family global transcription factor -
Arabidopsis thaliana (Mouse-ear cress), partial (7%)
Length = 549
Score = 515 bits (260), Expect = e-145
Identities = 296/308 (96%), Gaps = 5/308 (1%)
Strand = Plus / Plus
Query: 711 gaaaatggaagttgaccagaagacagagacgggagacggcaggaaatattcgaggtttga 770
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2 gaaaatggaagttgaccagaagacagagacgggagacggcagggaatattcgaggtttgg 61
Query: 771 tcctgcaggtttttatgaggccattaagccttcaaa-----atccgagccaatgctcgaa 825
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 62 tcctgcaggtttttatgaggccattaagccttcaaagtaagatccgagccaatgctcgaa 121
Query: 826 gatgaaataccagagttacttcctgaactgaggccatatcaacggcgtgcagctttctgg 885
|||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||
Sbjct: 122 gatgaaataccagagttacttcctgagctgaggccttatcaacggcatgtagctttctgg 181
Query: 886 atggtagaacgggagaaagcactgaaagaaagtcagggtgaaagagaaagaaatcagttt 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atggtagaacgggagaaagcactgaaagaaagtcagggtgaaagagaaagaaatcagttt 241
Query: 946 cattctccattatgtgtgcctgtggattttctggacacaaggtctaaaatgtttttcaat 1005
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 242 cattctccattatgtgtgcctgtggattttctggacgcaaggtctaaaatgtttttcaat 301
Query: 1006 ccattcag 1013
||||||||
Sbjct: 302 ccattcag 309
Score = 408 bits (206), Expect = e-112
Identities = 233/241 (96%), Gaps = 2/241 (0%)
Strand = Plus / Plus
Query: 1075 gatgagatgggcttgggtaaaactgttgaattgctcgcttgcatctatgctcaccggaga 1134
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 309 gatgagatgggcttgggtaaaactgttgaattgctcgcttgcatctttgctcaccggaga 368
Query: 1135 tcagcatctggaagcgacacactaattgagtcagtgccccaagttaacggggaccaaaat 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcagcatctggaagcgacacactaattgagtcagtgccccaagttaacggggaccaaaat 428
Query: 1195 atcactttaaaaagactcaaaagagaacgagtggagtgcatatgtggggctgtgaacgaa 1254
|||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||
Sbjct: 429 atcactttaaaaagactcaaaagagagcgaggggagtgcatatgtggagctgtgaatgaa 488
Query: 1255 agtatcaaatatcaagggc--tatgggttcaatgtgacatttgcgatgcttggcaacatg 1312
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 agtatcaaatatcaagggctatatgggttcaatgtgacatttgcaatgcttggcaacatg 548
Query: 1313 c 1313
|
Sbjct: 549 c 549
>gnl|LJGI|TC76133 similar to UniRef100_A7Q3Y7 Cluster: Chromosome chr13 scaffold_48,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_48, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 501
Score = 430 bits (217), Expect = e-119
Identities = 223/225 (99%)
Strand = Plus / Plus
Query: 4780 ttgaacaggagcaggagcaaccattcattcattagtgggaacacaaaaaaccaagatcaa 4839
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 1 ttgaacaggagcaggagcaaccattcattcattagtgggaacacaaaaaaccgagatcca 60
Query: 4840 cctgttttgaccctgaaggatgttgagtccttgctgtcaagaacaccagtaaccatgcca 4899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctgttttgaccctgaaggatgttgagtccttgctgtcaagaacaccagtaaccatgcca 120
Query: 4900 gaaagtgatgaaaatcctattgcaaatgcagacctgagaaactttccaccatcaatggct 4959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaagtgatgaaaatcctattgcaaatgcagacctgagaaactttccaccatcaatggct 180
Query: 4960 gcggctatagctgctgagaggagacttaatgatcataggacatga 5004
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcggctatagctgctgagaggagacttaatgatcataggacatga 225
>gnl|LJGI|DC598170 similar to UniRef100_Q7XJP0 Cluster: SNF2/SWI2 family global
transcription factor; n=1; Arabidopsis thaliana|Rep:
SNF2/SWI2 family global transcription factor -
Arabidopsis thaliana (Mouse-ear cress), partial (3%)
Length = 514
Score = 404 bits (204), Expect = e-111
Identities = 262/279 (93%), Gaps = 3/279 (1%)
Strand = Plus / Plus
Query: 2622 gctggcagaaaatgttgcattgatattgccttccaaaggaaagcaattctctggaacttc 2681
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 236 gctggcagagaatgttgcattcatattgccttccaaaggaaatcaattctctggaacttc 295
Query: 2682 tgcagttaagtcaaccagaaagcattttattgcaaaggttgatcg-ttgtcttgtgaaga 2740
||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 296 tgcagttaagtcaaccagaaagcattttatttcaaaggttgatcgtttttcttgtgaaga 355
Query: 2741 ggcaaaaaataagtggctgcgatgataaaaatttagaagtggcttctgcagaaccatcac 2800
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 356 ggcaaaaaataagtggctgcaatgacaaaaatttagaagtggcttctgcagaaccatcac 415
Query: 2801 atattgcatc--cagcctttcagaaaatgacttaaatgaggatttgaaatttgatgattt 2858
| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 416 acattgcatctagagcctttcagaaaataacttaaatgaggatttggaatttgatgattt 475
Query: 2859 atcagccagtcctgtcaaatctctgatagcagaatgtga 2897
|||||| | |||||||||||||||||||||| |||||||
Sbjct: 476 atcagctaatcctgtcaaatctctgatagcaaaatgtga 514
Score = 331 bits (167), Expect = 2e-89
Identities = 186/191 (97%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 2295 gaatgctttactgaaacttcgtcaggcttgttgtcatccccaggttggaagttctggttt 2354
|||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||
Sbjct: 1 gaatgctttactgaaacttcgtg-ggcttgttgtcatccccatgttggatgttctggttt 59
Query: 2355 gcgttccctgcagcagtcacctatgaccatggaggaaatactaatggttcttataaataa 2414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 60 gcgttccctgcagcagtcacctatgaccatggaggaaatattaatggttcttataaataa 119
Query: 2415 gaccaagatcgaaggggaggaagctcttaggaggttagttgtttctctgaatgggcttgc 2474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaccaagatcgaaggggaggaagctcttaggaggttagttgtttctctgaatgggcttgc 179
Query: 2475 agcaatagcta 2485
|||||||||||
Sbjct: 180 agcaatagcta 190
>gnl|LJGI|BW596395
Length = 486
Score = 212 bits (107), Expect = 2e-53
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 3567 ggtttcaagatcagcatctgagttggagcttattcttggagctatgaagaactattgcaa 3626
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggttttaagatcagcatctgagttggagcttattcttggagctatgaagaactattgcaa 402
Query: 3627 ggctcggttaggcaggggcagtgtctcagcagccactaggcatttacatatgcttgagg 3685
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 ggctctgttaggcaggggcagtgtctcagcagccaccaggcatttacatatgcttgagg 461
Score = 147 bits (74), Expect = 8e-34
Identities = 98/105 (93%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 1993 ggagatattggagctatggaatttacacacacaattttcaagcaaatcatgtggcgttct 2052
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8 ggagatattggagctgtggaatttacacacang-ttttcaagcaaatcatgtggcgttct 66
Query: 2053 tctaaaaaacatgttgcagatgaattggaccttccatcccaagag 2097
|| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 67 tcgaaaaaacatgttgcagatgaattggacattccctcccaagag 111