Miyakogusa Predicted Gene
- Lj2g3v2102980.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2102980.2 Non Chatacterized Hit- tr|I1L6P3|I1L6P3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,30.19,3e-18,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
,CUFF.38691.2
(1043 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Ch... 575 e-163
gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Ch... 248 6e-65
gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chr... 190 1e-47
gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 180 1e-44
gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Ch... 155 7e-37
gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Ch... 131 1e-29
gnl|LJGI|TC69898 similar to UniRef100_A7QPA9 Cluster: Chromosome... 111 9e-24
gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Ch... 103 2e-21
gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Te... 98 1e-19
gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Ch... 96 5e-19
gnl|LJGI|AV429083 weakly similar to UniRef100_A7QQ24 Cluster: Ch... 88 1e-16
>gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined
scaffold_1129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1129,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 688
Score = 575 bits (290), Expect = e-163
Identities = 467/526 (88%)
Strand = Plus / Minus
Query: 518 atgttgtaacttacagttctcttatagatggtttgtgcaagtctgggagaatctctgatg 577
||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 675 atgttgtaacttatagttctcttatagatggtttgtgcaaatcagggagaatatctgatg 616
Query: 578 cttgggagcttgttaatgagatgcactctagaggtctaccacctaatgtaatcacgtaca 637
||||||| |||||| |||||||||| | |||||||| ||||||| |||||||||| ||||
Sbjct: 615 cttgggatcttgttgatgagatgcattgtagaggtcaaccacctgatgtaatcacataca 556
Query: 638 gttctttattggatgctttatgcaaaaaccatcacgttgacaatgcaatttctttgatca 697
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct: 555 attctttattggatgctttatgcaaaagccatcatgttgacagggcaatttctttgatca 496
Query: 698 agaaaatgaaacaccagggtattctgccagatgtttacacatacactatactcttggatg 757
||||||||||| |||||||| ||| || | ||||||||| |||||| ||||||
Sbjct: 495 agaaaatgaaagaccagggtcttcaaccttcgatgcacacatacaatatacttatggatg 436
Query: 758 gactatgcaaaggtggaagacttaaggacgcacaagaggtttttcaggatcttttaatta 817
|||||||||||| || ||| || || | |||||||||||||||||||||||||||||||
Sbjct: 435 gactatgcaaagcaggcagagttgagaatgcacaagaggtttttcaggatcttttaatta 376
Query: 818 aaggctacaatttagatgtacggacgtataccataatgattaatgggctttgtaaagacg 877
||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |
Sbjct: 375 aaggctacaatttagatgtacggtcgtatacaattatgattaatgggctttgtaaagagg 316
Query: 878 gcttatttgatgaagcattggcattgatgtcaaaaatggaagacaacggttgcacccctg 937
|||| ||||||||||||||| || ||||||||||||||||| |||||||||||| ||||
Sbjct: 315 gcttgtttgatgaagcattgacactgatgtcaaaaatggaaaacaacggttgcatcccta 256
Query: 938 atgctgtaacatatgaaataattatttatgctctctttcaggaaggtgacaatgataagg 997
| |||||||| ||||||||||| ||| |||||||||||| |||||||||||| |||||
Sbjct: 255 acgctgtaacttatgaaataataattcgtgctctctttcaaaaaggtgacaatgttaagg 196
Query: 998 cagagaagcttctccgtcaaatgattgctagaggtctattgtaaga 1043
|||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 195 tagagaagcttctccgtgaaatggctgctagaggtctattgtaaga 150
>gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 537
Score = 248 bits (125), Expect = 6e-65
Identities = 296/353 (83%)
Strand = Plus / Plus
Query: 1 atgtacagcacaatcattgatagtttatgtaaagataaacttgtaaatgatgcctacaat 60
||||||||||||||||||||||| | || |||||||||||||||| |||||||| | ||
Sbjct: 181 atgtacagcacaatcattgatagcctctgcaaagataaacttgtaagtgatgcctgcgat 240
Query: 61 ttatattctgaaatgctcgccaaaagaatttcacctgatgttgtcacttacactacgcta 120
|||||||| |||||| | ||| |||||||| ||| ||||||||||| || | | |||
Sbjct: 241 ttatattcggaaatggtactcaagagaatttctcctactgttgtcactttcaatgctcta 300
Query: 121 atatctggattttgcattgtgggtcaattgaaagaagcagttggtttgttaaatcaaatg 180
|| | ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 301 atttatggcttttgcattgtgggtcaattgaaagaagcagttggtttgctaaatgaaatg 360
Query: 181 gtagtgaaaagcatcaatccagatgtttatacctttagtatattagttgatgctctatgc 240
|| |||||| |||||| ||| |||| |||| |||| ||| | ||||||| ||||
Sbjct: 361 gtgttgaaaaacatcaacccaattgttaatacttttaatattctggttgatgggttatgt 420
Query: 241 aaggaaggaaaggtgaaagaagccaaaaatgtgttagctgtcatgatcaaaggaggggaa 300
||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||| | |
Sbjct: 421 aaggaaggaaaggtgaaagaagctaaaaatgtgttagctgtgatgatgaaagaaggtgta 480
Query: 301 aaacctgatgttgttacttatagttctttgatggatgggtattgtttagttaa 353
|| |||||| || | ||||| | |||| | |||||||||||||| |||||||
Sbjct: 481 aagcctgatattttcacttacaattctatcatggatgggtattgcctagttaa 533
>gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1411
Score = 190 bits (96), Expect = 1e-47
Identities = 252/304 (82%)
Strand = Plus / Plus
Query: 735 cacatacactatactcttggatggactatgcaaaggtggaagacttaaggacgcacaaga 794
|||||||| |||||| |||||||||| ||||||| |||||||||||| | ||||||||
Sbjct: 19 cacatacagtatacttatggatggactgtgcaaagaaggaagacttaagaatgcacaaga 78
Query: 795 ggtttttcaggatcttttaattaaaggctacaatttagatgtacggacgtataccataat 854
||||||||||||||||||| ||||||||| || || ||| | || ||||| || ||
Sbjct: 79 tgtttttcaggatcttttaactaaaggctatcatgtaactgtcccgatatatactattat 138
Query: 855 gattaatgggctttgtaaagacggcttatttgatgaagcattggcattgatgtcaaaaat 914
||| ||||||||||||||||| || || ||||||||||||||||| ||| |||| |||||
Sbjct: 139 gatcaatgggctttgtaaagagggtttgtttgatgaagcattggccttgctgtctaaaat 198
Query: 915 ggaagacaacggttgcacccctgatgctgtaacatatgaaataattatttatgctctctt 974
||||||||| ||||||| ||| ||||| |||| | |||| ||| ||| |||||| ||
Sbjct: 199 ggaagacaatggttgcatgcctaatgctataactttcgaaacaatcattcgtgctctatt 258
Query: 975 tcaggaaggtgacaatgataaggcagagaagcttctccgtcaaatgattgctagaggtct 1034
| || | ||||| ||| ||| ||||||||| ||||| ||| ||||||| || ||||||||
Sbjct: 259 tgagaagggtgagaattatatggcagagaaacttctacgtgaaatgatggcaagaggtct 318
Query: 1035 attg 1038
||||
Sbjct: 319 attg 322
>gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (9%)
Length = 527
Score = 180 bits (91), Expect = 1e-44
Identities = 163/187 (87%)
Strand = Plus / Minus
Query: 853 atgattaatgggctttgtaaagacggcttatttgatgaagcattggcattgatgtcaaaa 912
||||| ||||| ||||||||||| ||||| ||||||||||||||| |||||||||| |||
Sbjct: 477 atgatcaatggactttgtaaagagggcttgtttgatgaagcattgacattgatgtcgaaa 418
Query: 913 atggaagacaacggttgcacccctgatgctgtaacatatgaaataattatttatgctctc 972
||||||||||| ||||||| || |||| | |||| | ||||| |||||||| ||||||
Sbjct: 417 atggaagacaatggttgcatccatgatccaataacttttgaaacaattatttctgctctt 358
Query: 973 tttcaggaaggtgacaatgataaggcagagaagcttctccgtcaaatgattgctagaggt 1032
||| | ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct: 357 tttgaaaaaggtgaaaatgataaggcagagaagcttcttcgtgaaatgattgctagagat 298
Query: 1033 ctattgt 1039
|||||||
Sbjct: 297 ctattgt 291
>gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 802
Score = 155 bits (78), Expect = 7e-37
Identities = 195/234 (83%)
Strand = Plus / Plus
Query: 1 atgtacagcacaatcattgatagtttatgtaaagataaacttgtaaatgatgcctacaat 60
|||||||||| ||||||||||| | ||||||||||||||||||| |||||| | ||||
Sbjct: 564 atgtacagcatcatcattgatagcctgtgtaaagataaacttgtaagtgatgcttgcaat 623
Query: 61 ttatattctgaaatgctcgccaaaagaatttcacctgatgttgtcacttacactacgcta 120
||||||||||||||| | | ||| |||| || |||||||||||||| |||| | | ||
Sbjct: 624 ttatattctgaaatgattgtcaagggaatatctcctgatgttgtcacgtacaatgcttta 683
Query: 121 atatctggattttgcattgtgggtcaattgaaagaagcagttggtttgttaaatcaaatg 180
|||| ||| ||||||||||| |||||||||||| ||||| |||| ||| || || |||||
Sbjct: 684 atatatggcttttgcattgttggtcaattgaaacaagcaattgggttgctagatgaaatg 743
Query: 181 gtagtgaaaagcatcaatccagatgtttatacctttagtatattagttgatgct 234
||| |||||| ||| | |||||||||||||| | || |||||| || ||||||
Sbjct: 744 gtattgaaaaacatagacccagatgtttatacttataatatattggtcgatgct 797
>gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 576
Score = 131 bits (66), Expect = 1e-29
Identities = 234/290 (80%)
Strand = Plus / Minus
Query: 754 gatggactatgcaaaggtggaagacttaaggacgcacaagaggtttttcaggatctttta 813
|||||||||||||||| |||||| |||||| || |||||| ||||||||| ||||||
Sbjct: 313 gatggactatgcaaagttggaaggcttaagattgcccaagagatttttcaggttcttttg 254
Query: 814 attaaaggctacaatttagatgtacggacgtataccataatgattaatgggctttgtaaa 873
| |||||||||||||| |||| ||||||||| | ||||| |||||| |||||||
Sbjct: 253 agcgaaggctacaatttaaatgtcatgacgtatactgttatgatcaatgggtattgtaaa 194
Query: 874 gacggcttatttgatgaagcattggcattgatgtcaaaaatggaagacaacggttgcacc 933
|| || ||| ||||||| || ||| || ||||||||||||||||||| |||||||
Sbjct: 193 gaaggtttacttgatgaggctcaggccctgctgtcaaaaatggaagacaatggttgcatt 134
Query: 934 cctgatgctgtaacatatgaaataattatttatgctctctttcaggaaggtgacaatgat 993
||| ||||||| | | | ||| ||| |||| |||||||||| | || ||| ||||||
Sbjct: 133 cctaatgctgtgaattttcaaacaataatttgtgctctctttgaaaaaaatgagaatgat 74
Query: 994 aaggcagagaagcttctccgtcaaatgattgctagaggtctattgtaaga 1043
|||||||||| ||| | ||| ||||||||||||||| ||||||||||||
Sbjct: 73 aaggcagagagactttttcgtgaaatgattgctagagatctattgtaaga 24
>gnl|LJGI|TC69898 similar to UniRef100_A7QPA9 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (69%)
Length = 939
Score = 111 bits (56), Expect = 9e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 267 aaatgtgttagctgtcatgatcaaaggaggggaaaaacctgatgttgttacttatagttc 326
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 876 aaatgtgttagctgtcatgatcaaaggaggggaaaaacctaatgtggttacttatagttc 935
Query: 327 tttg 330
||||
Sbjct: 936 tttg 939
>gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 760
Score = 103 bits (52), Expect = 2e-21
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 1 atgtacagcacaatcattgatagtttatgtaaagataaacttgtaaatgatgcctacaat 60
||||||||||||||||| ||||| | ||||||||||||||||||| | |||| | ||||
Sbjct: 617 atgtacagcacaatcatcgatagcctgtgtaaagataaacttgtaagtcatgcttgcaat 676
Query: 61 ttatattctgaaatgctcgccaaaagaatttcacctgatgttgtcacttacactacgcta 120
||||||||||||||||| ||||| |||| || ||| |||| ||||| |||| | | ||
Sbjct: 677 ttatattctgaaatgcttgccaagggaatatctcctaatgtagtcacgtacagtgcttta 736
Query: 121 atatctggattttgcattgt 140
|||| ||| |||||||||||
Sbjct: 737 atatatggcttttgcattgt 756
>gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (12%)
Length = 528
Score = 97.6 bits (49), Expect = 1e-19
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 724 ccagatgtttacacatacactatactcttggatggactatgcaaaggtggaagacttaag 783
|||||| | |||||||||| |||| | | ||||||||||||||| |||||||| | |||
Sbjct: 428 ccagatatgtacacatacaatataattattgatggactatgcaaaagtggaagagtaaag 369
Query: 784 gacgcacaagaggtttttcaggatcttttaattaaaggcta 824
|| ||||||||| |||||||||||||||| |||||||||||
Sbjct: 368 gatgcacaagagctttttcaggatcttttgattaaaggcta 328
>gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 766
Score = 95.6 bits (48), Expect = 5e-19
Identities = 96/112 (85%)
Strand = Plus / Plus
Query: 1 atgtacagcacaatcattgatagtttatgtaaagataaacttgtaaatgatgcctacaat 60
||||||| ||| ||||||||||| || || |||||||||||||| | |||||| | |||
Sbjct: 631 atgtacaacactatcattgatagcttgtgcaaagataaacttgttagtgatgcgtttaat 690
Query: 61 ttatattctgaaatgctcgccaaaagaatttcacctgatgttgtcacttaca 112
||||||||||||||| | ||||| ||| ||| |||||||||| |||||||||
Sbjct: 691 ttatattctgaaatggttgccaagagagttttacctgatgttttcacttaca 742
>gnl|LJGI|AV429083 weakly similar to UniRef100_A7QQ24 Cluster: Chromosome chr2
scaffold_140, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_140, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 300
Score = 87.7 bits (44), Expect = 1e-16
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 192 catcaatccagatgtttatacctttagtatattagttgatgctctatgcaaggaaggaaa 251
|||||| |||||||||| |||||||| |||||| ||||||||| |||| ||| |||||||
Sbjct: 32 catcaaaccagatgtttctacctttaatatattggttgatgctttatgtaagaaaggaaa 91
Query: 252 ggtgaaagaagccaaaaatgtgttagctgtcatgat 287
||||||| | || || |||||||| ||||| |||||
Sbjct: 92 ggtgaaacatgctaagaatgtgttggctgtgatgat 127