Miyakogusa Predicted Gene
- Lj2g3v2089800.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2089800.1 tr|G7K989|G7K989_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_5g00,66.57,0,RRM,RNA recognition motif domain; ZF_C3H1,Zinc
finger, CCCH-type; no description,Nucleotide-binding,,CUFF.38563.1
(1974 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78977 similar to UniRef100_A7Q1Y9 Cluster: Chromosome... 1106 0.0
gnl|LJGI|TC70674 similar to UniRef100_A7PQV9 Cluster: Chromosome... 698 0.0
gnl|LJGI|TC81652 similar to UniRef100_Q6T284 Cluster: Predicted ... 103 4e-21
gnl|LJGI|TC64681 similar to UniRef100_A7Q1Y9 Cluster: Chromosome... 66 9e-10
>gnl|LJGI|TC78977 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 605
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Plus
Query: 1 atgggttcttttgaagccaccaatgtggtcctctcaagaatcaaaaacattgaacctgaa 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 36 atgggttcttttgaagccaccaatgtgcccctctcaagaatcaaaaacattgaacctgaa 95
Query: 61 aacgcttccaaaatcatgggttatctcctcatgaaccttgaagactctgaactcttgcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 aacgcttccaaaatcatgggttatctcctcatgaaccttgaagactctgaactcttgcgt 155
Query: 121 ttagcttgtagccctgaccctgttttgcacaccatcattcccagggttaagacccacctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ttagcttgtagccctgaccctgttttgcacaccatcattcccagggttaagacccacctc 215
Query: 181 ggtttaaccttaaccccttcctctccctccaccgccgcaagacccatttctaccaccaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggtttaaccttaaccccttcctctccctccaccgccgcaagacccatttctaccaccaac 275
Query: 241 aacaacccattcaacccgttttcaaaggtttcccctagaatccccacccccaccaatggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aacaacccattcaacccgttttcaaaggtttcccctagaatccccacccccaccaatggc 335
Query: 301 tttgacttctccagaaacccgttttcactctctgggttacccaaaaaccaccccattagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttgacttctccagaaacccgttttcactctctgggttacccaaaaaccaccccattagt 395
Query: 361 ccaacttcgagttctctactctcctatgagaacatccgtgctgcttcttcgtttcaaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccaacttcgagttctctactctcctatgagaacatccgtgctgcttcttcgtttcaaccc 455
Query: 421 cgtgtcaacaatggtgatgttgatcttgttgatgagcagcaagtgaatgagttcttcccg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgtgtcaacaacggtgatgttgatcttgttgatgagcagcaagtgaatgagttcttcccg 515
Query: 481 tttctcaatgaaccctctaacaacgatgatgcgttcgatccacatcttgaaccgggtatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttctcaatgaaccctctaacaacgatgatgcgttcgatccacatcttgaaccgggtatt 575
Query: 541 ggggggcccaattggcattctgtcaacaat 570
||||||||||||||||||||||||||||||
Sbjct: 576 ggggggcccaattggcattctgtcaacaat 605
>gnl|LJGI|TC70674 similar to UniRef100_A7PQV9 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 767
Score = 698 bits (352), Expect = 0.0
Identities = 352/352 (100%)
Strand = Plus / Plus
Query: 1623 tgatataggagatattacaggatacagtggcggcctcacttctaccaattctttagaaac 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgatataggagatattacaggatacagtggcggcctcacttctaccaattctttagaaac 61
Query: 1683 tgcttctgagcagcagcagccacaaaaagaagttgatccagcttgcattgatgatactga 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgcttctgagcagcagcagccacaaaaagaagttgatccagcttgcattgatgatactga 121
Query: 1743 gggtgagaatatcaaggatagtctgaatgcagaagtcacagatctcagtaagagtgtgga 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gggtgagaatatcaaggatagtctgaatgcagaagtcacagatctcagtaagagtgtgga 181
Query: 1803 gcaggaccttcctgatagtctctttgcttcaccaacaaaagcagctggagattatatgtc 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcaggaccttcctgatagtctctttgcttcaccaacaaaagcagctggagattatatgtc 241
Query: 1863 tgacttctctacattgacagaggtcaaggagagtgctgaattttctactagctcatctac 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgacttctctacattgacagaggtcaaggagagtgctgaattttctactagctcatctac 301
Query: 1923 tcgtaacaatttagaatcaacaaccgcttctagtgatgtggcttcctgttag 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcgtaacaatttagaatcaacaaccgcttctagtgatgtggcttcctgttag 353
>gnl|LJGI|TC81652 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1; Populus
tremula x Populus alba|Rep: Predicted protein - Populus
tremula x Populus alba, partial (35%)
Length = 981
Score = 103 bits (52), Expect = 4e-21
Identities = 190/236 (80%)
Strand = Plus / Plus
Query: 1054 cagatttatttgacatttcccgctgaaagcacattcaaagatgaggatgtttctgagtac 1113
||||| || ||||| ||||| || || ||||| |||| ||| || |||||||| | |||
Sbjct: 588 cagatatacttgacttttccagcagatagcactttcagagaggaagatgtttcaaactac 647
Query: 1114 ttcagcaaatttggacctgtacaagatgtgagaattccttaccagcaaaagcgtatgttt 1173
||||||| | || ||||| |||||||| || || || || |||||||| || ||||||
Sbjct: 648 ttcagcatctacgggcctgttcaagatgttaggatcccatatcagcaaaaacggatgttt 707
Query: 1174 gggtttgttaccttcgtctatccagagacagttaggctgattttatccaaagggaatcct 1233
|| ||||||||||| | ||||| |||||||| | ||| |||||||| ||||| || ||
Sbjct: 708 ggatttgttacctttgcttatccggagacagtgaagctcattttatcaaaaggaaacccg 767
Query: 1234 cattttatctgtgattctcgtgtacttgtcaaaccctacaaggagaagggaaaagt 1289
|||||| | |||||| |||| || ||||| || || ||||||||||||||||||||
Sbjct: 768 cattttgtttgtgatgctcgagtgcttgttaagccttacaaggagaagggaaaagt 823
Score = 71.9 bits (36), Expect = 1e-11
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 667 aagccatgcctttactttgcaagagggttctgtaaaaatggctccaattgcaagttcgtt 726
||||| |||||||||||||||||||||| ||||||||||||| | | ||||| |||| ||
Sbjct: 207 aagccttgcctttactttgcaagagggtactgtaaaaatggcactagttgcaggttcctt 266
Query: 727 catg 730
||||
Sbjct: 267 catg 270
>gnl|LJGI|TC64681 similar to UniRef100_A7Q1Y9 Cluster: Chromosome chr13 scaffold_45,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_45, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 984
Score = 65.9 bits (33), Expect = 9e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 667 aagccatgcctttactttgcaagagggttctgtaaaaatgg 707
||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 838 aagccttgcctttactttgcaagagggtactgtaaaaatgg 878