Miyakogusa Predicted Gene
- Lj2g3v2017500.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2017500.1 tr|Q6H7R8|Q6H7R8_ORYSJ Os02g0642200 protein
OS=Oryza sativa subsp. japonica GN=OJ1112_G03.12 PE=2
SV,60.87,5e-19,Remorin_C,Remorin, C-terminal; FAMILY NOT NAMED,NULL;
coiled-coil,NULL; seg,NULL,CUFF.38427.1
(546 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74562 weakly similar to UniRef100_Q8LC13 Cluster: Rem... 714 0.0
gnl|LJGI|TC58521 weakly similar to UniRef100_A7QZ54 Cluster: Chr... 109 2e-23
gnl|LJGI|AW719560 weakly similar to UniRef100_A7QIT0 Cluster: Ch... 103 1e-21
gnl|LJGI|TC66356 weakly similar to UniRef100_A7QZ54 Cluster: Chr... 103 1e-21
gnl|LJGI|TC64000 similar to UniRef100_Q8LC13 Cluster: Remorin; n... 60 2e-08
>gnl|LJGI|TC74562 weakly similar to UniRef100_Q8LC13 Cluster: Remorin; n=1;
Arabidopsis thaliana|Rep: Remorin - Arabidopsis thaliana
(Mouse-ear cress), partial (62%)
Length = 1008
Score = 714 bits (360), Expect = 0.0
Identities = 369/372 (99%)
Strand = Plus / Plus
Query: 1 atgggagaagaagattccaacttgaacaaagtcgaatcacagacagagttcgtggactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atgggagaagaagattccaacttgaacaaagtcgaatcacagacagagttcgtggactct 329
Query: 61 gtttctgaacaggaaccccaagtagaagaaaaggaatcagagaaaccagaagctgtcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtttctgaacaggaaccccaagtagaagaaaaggaatcagagaaaccagaagctgtcacc 389
Query: 121 caagaggaacctcataaggaggttccttctccaatcgttcaaaatgttgctgatgatgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caagaggaacctcataaggaggttccttctccaatcgttcaaaatgttgctgatgatgat 449
Query: 181 gctaaaaaagttacaggggactcagttgacagagatgctgcgcttgcaagagttgtaaca 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gctaaaaaagttacagggggctcagttgacagagatgctgcgcttgcaagagttgtaaca 509
Query: 241 gagaaaagattggctctgattaaagcatgggaagaaagtgaaaagacaaaagcagagaac 300
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 510 gaaaaaagattggctctgattaaagcatgggaagaaagtgaaaggacaaaagcagagaac 569
Query: 301 agggcatacaagaagcaatctgccgttggattgtgggaggaaagcaggaaagcttctata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agggcatacaagaagcaatctgccgttggattgtgggaggaaagcaggaaagcttctata 629
Query: 361 gaggcagaactc 372
||||||||||||
Sbjct: 630 gaggcagaactc 641
Score = 202 bits (102), Expect = 2e-51
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 437 tagctgaaattcaccaggcagcagaggagaaaagggcaaccgttgaggcgaataaaaagg 496
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 706 tagctgaaattcaccaggcagcagaggagaaaagggcaaccgttgagtctaataaaaagg 765
Query: 497 aagagtttcttgaggttgaagaaacagctgcaaagttccgtagccgtgga 546
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aagagtttcttgaggttgaagaaacagctgcaaagttccgtagccgtgga 815
>gnl|LJGI|TC58521 weakly similar to UniRef100_A7QZ54 Cluster: Chromosome undetermined
scaffold_265, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_265,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (93%)
Length = 897
Score = 109 bits (55), Expect = 2e-23
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 206 ttgacagagatgctgcgcttgcaagagttgtaacagagaaaagattggctctgattaaag 265
|||| |||||||||| ||||||||||||| | || |||||||||||||| |||||||||
Sbjct: 270 ttgatagagatgctgttcttgcaagagttgaatcacagaaaagattggctttgattaaag 329
Query: 266 catgggaagaaagtgaaaagacaaaagcagagaacagggcata 308
|||||||||||| ||| |||||||||| ||| |||| ||||||
Sbjct: 330 catgggaagaaaatgagaagacaaaagtagataacaaggcata 372
>gnl|LJGI|AW719560 weakly similar to UniRef100_A7QIT0 Cluster: Chromosome chr2
scaffold_105, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_105, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (76%)
Length = 480
Score = 103 bits (52), Expect = 1e-21
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 213 agatgctgcgcttgcaagagttgtaacagagaaaagattggctctgattaaagcatggga 272
|||||||| ||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct: 41 agatgctgttcttgcaagagttgaatcacagaaaagattggctttgattaaagcatggga 100
Query: 273 agaaagtgaaaagacaaaagcagagaacagggcata 308
||||| ||| |||||||||| ||| |||| ||||||
Sbjct: 101 agaaaatgagaagacaaaagtagataacaaggcata 136
>gnl|LJGI|TC66356 weakly similar to UniRef100_A7QZ54 Cluster: Chromosome undetermined
scaffold_265, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_265,
whole genome shotgun sequence - Vitis vinifera (Grape),
complete
Length = 725
Score = 103 bits (52), Expect = 1e-21
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 213 agatgctgcgcttgcaagagttgtaacagagaaaagattggctctgattaaagcatggga 272
|||||||| ||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct: 231 agatgctgttcttgcaagagttgaatcacagaaaagattggctttgattaaagcatggga 290
Query: 273 agaaagtgaaaagacaaaagcagagaacagggcata 308
||||| ||| |||||||||| ||| |||| ||||||
Sbjct: 291 agaaaatgagaagacaaaagtagataacaaggcata 326
>gnl|LJGI|TC64000 similar to UniRef100_Q8LC13 Cluster: Remorin; n=1; Arabidopsis
thaliana|Rep: Remorin - Arabidopsis thaliana (Mouse-ear
cress), partial (68%)
Length = 1313
Score = 60.0 bits (30), Expect = 2e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 212 gagatgctgcgcttgcaagagttgtaacagagaaaagattggctctgattaaagcatggg 271
||||||||| |||| ||||||||| ||| ||||| || || | || || ||||||||||
Sbjct: 587 gagatgctgtgcttacaagagttgcaactgagaagaggctgtcactaatcaaagcatggg 646
Query: 272 aagaaagtgaaaag 285
||||||||||||||
Sbjct: 647 aagaaagtgaaaag 660