Miyakogusa Predicted Gene
- Lj2g3v2003020.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2003020.1 tr|Q4TU48|Q4TU48_LOTJA Cell cycle switch protein
CCS52A OS=Lotus japonicus PE=2 SV=1,79.82,0,seg,NULL;
WD_REPEATS_2,WD40 repeat; WD_REPEATS_REGION,WD40-repeat-containing
domain; WD_REPEATS_1,WD,NODE_44473_length_1668_cov_11.796762.path1.1
(1416 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72031 homologue to UniRef100_Q4TU48 Cluster: Cell cyc... 989 0.0
gnl|LJGI|TC59067 UniRef100_Q4TU48 Cluster: Cell cycle switch pro... 969 0.0
gnl|LJGI|TC66719 UniRef100_Q4TU48 Cluster: Cell cycle switch pro... 119 5e-26
gnl|LJGI|TC63899 similar to UniRef100_A7PIS7 Cluster: Chromosome... 62 1e-08
>gnl|LJGI|TC72031 homologue to UniRef100_Q4TU48 Cluster: Cell cycle switch protein
CCS52A; n=1; Lotus japonicus|Rep: Cell cycle switch
protein CCS52A - Lotus japonicus, partial (34%)
Length = 840
Score = 989 bits (499), Expect = 0.0
Identities = 499/499 (100%)
Strand = Plus / Plus
Query: 918 gaatgacaacagattgcttgtttggaatcaacattcaactatgcctgtcctgaagtactt 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaatgacaacagattgcttgtttggaatcaacattcaactatgcctgtcctgaagtactt 60
Query: 978 agagcatacagcagctgttaaagccattgcttggtctcctcatgttcatggacttcttgc 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagcatacagcagctgttaaagccattgcttggtctcctcatgttcatggacttcttgc 120
Query: 1038 gtcaggtggaggaactgcagaccgatgcattcgtttctggaataccaccacaaattcaca 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcaggtggaggaactgcagaccgatgcattcgtttctggaataccaccacaaattcaca 180
Query: 1098 cttaagttgcatggacactggaagtcaggtctgtaatcttatctggtccaaaaatgtcaa 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttaagttgcatggacactggaagtcaggtctgtaatcttatctggtccaaaaatgtcaa 240
Query: 1158 tgaactggtaagcacacatggctactcccagaaccagataaacatttggaaataccctgc 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaactggtaagcacacatggctactcccagaaccagataaacatttggaaataccctgc 300
Query: 1218 catgtcaaaggtagcaactcttacgggtcattcttatagagttctttatctttccatctc 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catgtcaaaggtagcaactcttacgggtcattcttatagagttctttatctttccatctc 360
Query: 1278 tcctgatgggcagactattgtcactggagctggagatgaaactcttaggttttggaatgt 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcctgatgggcagactattgtcactggagctggagatgaaactcttaggttttggaatgt 420
Query: 1338 attcccttcccagaaatctcagaatactgaaagtggaattggagcatcatctcttggaag 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attcccttcccagaaatctcagaatactgaaagtggaattggagcatcatctcttggaag 480
Query: 1398 aactataattagatgacac 1416
|||||||||||||||||||
Sbjct: 481 aactataattagatgacac 499
>gnl|LJGI|TC59067 UniRef100_Q4TU48 Cluster: Cell cycle switch protein CCS52A; n=1;
Lotus japonicus|Rep: Cell cycle switch protein CCS52A -
Lotus japonicus, complete
Length = 2030
Score = 969 bits (489), Expect = 0.0
Identities = 837/953 (87%)
Strand = Plus / Plus
Query: 451 ccttctaagattctggatgctcctgcactgcaagacgatttttatctgaatcttgtggac 510
|||| |||| |||||||||| |||||| ||||||||||||| ||||||||||| |||||
Sbjct: 538 ccttataaggttctggatgcacctgcattgcaagacgatttctatctgaatctcgtggat 597
Query: 511 tggtcttcccacaatgtgttggctgtggctctgggtaactctgcttatttgtggaatgct 570
|||||||| ||||||||||||||||| | | ||||||||| || |||| | |||||||||
Sbjct: 598 tggtcttcgcacaatgtgttggctgttggtttgggtaactgtgtttatctctggaatgct 657
Query: 571 agcaccagcaaggtaactacattatgcgacttggggattgacgacctagtttgttcggtt 630
| | ||||||||||||| |||||| |||||||||||||||||| |||||||| |||
Sbjct: 658 tgtagtagcaaggtaactaaattatgtgacttggggattgacgactgcgtttgttcagtt 717
Query: 631 ggctggtctcagcgtggtacacaccttgctgttggaactagcaccggtaaagtgcagatt 690
|||||| |||| || |||||||| ||||||||||||||||||| || ||||| ||||||
Sbjct: 718 ggctgggctcaacgcggtacacatcttgctgttggaactagcaatggcaaagttcagatt 777
Query: 691 tgggatgcatctcaatgcaagttgataagaactatggagggtcatcatttacgtgttggg 750
||||||||||||| ||||||| ||||||| | ||||||||||||| |||| ||||||
Sbjct: 778 tgggatgcatctcgatgcaagaagataagatccatggagggtcatcgactacgcgttggg 837
Query: 751 gccctggcctggagttcatctattttgtcttctggtagcagagataaaaacatttatcaa 810
||| ||||||||||||||||| |||||||||||||| || | ||||| || |||||||||
Sbjct: 838 gccttggcctggagttcatctcttttgtcttctggtggccgggataagaatatttatcaa 897
Query: 811 cgagatatacgtgcacaggaagattttgtcagtaaactgtctgcacacaagtcagaggtt 870
||||||||||||||||| ||||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 898 cgagatatacgtgcacaagaagattatgtcagtaaactgtcagggcacaaatcagaggtt 957
Query: 871 tgtggactgaagtggtcttatgataaccgtgagttagcatctggagggaatgacaacaga 930
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 958 tgtggactgaagtggtcatatgataaccgtgagttggcatctggaggaaatgacaacaga 1017
Query: 931 ttgcttgtttggaatcaacattcaactatgcctgtcctgaagtacttagagcatacagca 990
||| |||||||||||||||| ||||| ||||| |||||||| | ||||||||||||
Sbjct: 1018 ttgtttgtttggaatcaacactcaacccaacctgttctgaagtattgtgagcatacagca 1077
Query: 991 gctgttaaagccattgcttggtctcctcatgttcatggacttcttgcgtcaggtggagga 1050
||||||||||| ||||| |||||||||||| |||||||||||||||| || || || |||
Sbjct: 1078 gctgttaaagctattgcatggtctcctcatcttcatggacttcttgcatctgggggtgga 1137
Query: 1051 actgcagaccgatgcattcgtttctggaataccaccacaaattcacacttaagttgcatg 1110
|| ||||| ||||| ||||| || |||||||| |||||||| || |||||||| || |||
Sbjct: 1138 acagcagatcgatgtattcgcttttggaatacaaccacaaactcgcacttaagctgtatg 1197
Query: 1111 gacactggaagtcaggtctgtaatcttatctggtccaaaaatgtcaatgaactggtaagc 1170
||||||||||||||||| || || ||| ||||||||||||||||||||||||| ||||||
Sbjct: 1198 gacactggaagtcaggtatgcaaccttgtctggtccaaaaatgtcaatgaactagtaagc 1257
Query: 1171 acacatggctactcccagaaccagataaacatttggaaataccctgccatgtcaaaggta 1230
|||||||||||||||||||| || |||| |||||| |||||| ||||||||||| |
Sbjct: 1258 acacatggctactcccagaatcaaataattgtttggagataccccaccatgtcaaagttg 1317
Query: 1231 gcaactcttacgggtcattcttatagagttctttatctttccatctctcctgatgggcag 1290
|| |||||||| || ||| | |||||||||||||||||| |||||||||| |||||||||
Sbjct: 1318 gccactcttacaggccatacgtatagagttctttatcttgccatctctccagatgggcag 1377
Query: 1291 actattgtcactggagctggagatgaaactcttaggttttggaatgtattcccttcccag 1350
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1378 actattgtaactggagctggagatgaaacacttaggttctggaatgtattcccttcccca 1437
Query: 1351 aaatctcagaatactgaaagtggaattggagcatcatctcttggaagaactat 1403
||||| ||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct: 1438 aaatcacagaatactgacagtgaaattggagcatcttctcttggaagaactat 1490
Score = 63.9 bits (32), Expect = 3e-09
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 130 ccttctagaacaatctgctccgacaggttcatcccatgcagatcttcttccaaattcgcg 189
||||| |||||||||| ||||||||||||||| || |||||||| | |||||||||||
Sbjct: 193 ccttccagaacaatctactccgacaggttcattcccagcagatctgcctccaaattcgcc 252
Query: 190 ctgtttga 197
|||||||
Sbjct: 253 ttgtttga 260
>gnl|LJGI|TC66719 UniRef100_Q4TU48 Cluster: Cell cycle switch protein CCS52A; n=1;
Lotus japonicus|Rep: Cell cycle switch protein CCS52A -
Lotus japonicus, partial (43%)
Length = 812
Score = 119 bits (60), Expect = 5e-26
Identities = 105/120 (87%)
Strand = Plus / Plus
Query: 451 ccttctaagattctggatgctcctgcactgcaagacgatttttatctgaatcttgtggac 510
|||| |||| |||||||||| |||||| ||||||||||||| ||||||||||| |||||
Sbjct: 689 ccttataaggttctggatgcacctgcattgcaagacgatttctatctgaatctcgtggat 748
Query: 511 tggtcttcccacaatgtgttggctgtggctctgggtaactctgcttatttgtggaatgct 570
|||||||| ||||||||||||||||| | | ||||||||| || |||| | |||||||||
Sbjct: 749 tggtcttcgcacaatgtgttggctgttggtttgggtaactgtgtttatctctggaatgct 808
Score = 63.9 bits (32), Expect = 3e-09
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 130 ccttctagaacaatctgctccgacaggttcatcccatgcagatcttcttccaaattcgcg 189
||||| |||||||||| ||||||||||||||| || |||||||| | |||||||||||
Sbjct: 344 ccttccagaacaatctactccgacaggttcattcccagcagatctgcctccaaattcgcc 403
Query: 190 ctgtttga 197
|||||||
Sbjct: 404 ttgtttga 411
>gnl|LJGI|TC63899 similar to UniRef100_A7PIS7 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 805
Score = 61.9 bits (31), Expect = 1e-08
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 461 ttctggatgctcctgcactgcaagacgatttttatctgaatcttgtggactggtc 515
|||||||||||||| |||| ||||| || ||||| |||||||||||||||||||
Sbjct: 628 ttctggatgctccttcacttcaagatgacttttacttgaatcttgtggactggtc 682