Miyakogusa Predicted Gene
- Lj2g3v2002880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2002880.1 tr|Q9ZWA0|Q9ZWA0_ARATH F11M21.29 protein
OS=Arabidopsis thaliana GN=F11M21.29 PE=4 SV=1,28.53,1e-17,seg,NULL;
TPX2_importin,Cell cycle regulated microtubule associated
protein,gene.g42771.t1.1
(1320 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS334889 similar to UniRef100_A7QK99 Cluster: Chromosom... 1084 0.0
gnl|LJGI|FS348369 weakly similar to UniRef100_A7QK99 Cluster: Ch... 101 1e-20
gnl|LJGI|TC58671 weakly similar to UniRef100_A7QK99 Cluster: Chr... 84 3e-15
gnl|LJGI|TC72689 weakly similar to UniRef100_A7QK99 Cluster: Chr... 76 6e-13
>gnl|LJGI|FS334889 similar to UniRef100_A7QK99 Cluster: Chromosome chr2 scaffold_112,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_112, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 759
Score = 1084 bits (547), Expect = 0.0
Identities = 570/579 (98%), Gaps = 9/579 (1%)
Strand = Plus / Plus
Query: 54 agaagataacgagtttgtttgcgatgagattgatttcgattacgagtttgatgctgctcg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaagataacgagtttgtttgcgatgagattgatttcgattacgagtttgatgctgctcg 240
Query: 114 cttcttcgatttcaccgcgccggaaactaccgctcaagctcgccaagccgaaacctggtt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttcttcgatttcaccgcgccggaaactaccgctcaagctcgccaagccgaaacctggtt 300
Query: 174 tcaaaccgccgggagctact---------cttttgtggcaaacctattgctcaaagagga 224
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 301 tcaaaccgccgggagctactgtccttctccttttgtggcaaacctattgctcaaagagga 360
Query: 225 ggatcctaaacctaattttggttcaaaagcagggtgtggaaatgggaacgtctctggatc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggatcctaaacctaattttggttcaaaagcagggtgtggaaatgggaacgtctctggatc 420
Query: 285 tctgggtgttggagttttacagaatgatgctatgcaagtgcaaccaggaatgaccttcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctgggtgttggagttttacagaatgatgctatgcaagtgcaaccaggaatgaccttcag 480
Query: 345 cagtaagacaatcggtgacagcttgaattctaaggctaaatctgctccaaggaagggttc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagtaagacaatcggtgacagcttgaattctaaggctaaatctgctccaaggaagggttc 540
Query: 405 aacactgatgaaacctacagctagtcaattggctaagcaaaaccggccccctcaagttac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacactgatgaaacctacagctagtcaattggctaagcaaaaccggccccctcaagttac 600
Query: 465 tcgctcaaggttgcagaaggcacaagctcataccaaggaaatgaatttatctacttctga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcgctcaaggttgcagaaggcacaagctcataccaaggaaatgaatttatctacttctga 660
Query: 525 caagatagagattcaagctgccaagcgacagaaattagagggcggtctcttgcgcaaggt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caagatagagattcaagctgccaagcgacagaaattagagggcggtctcttgcgcaaggt 720
Query: 585 tggtgatgtcaagcaacaagctactcttgtccacaaggc 623
|||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tggtgatgtcaagcaacaagctactcttgtccacaaggc 759
>gnl|LJGI|FS348369 weakly similar to UniRef100_A7QK99 Cluster: Chromosome chr2
scaffold_112, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_112, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (14%)
Length = 680
Score = 101 bits (51), Expect = 1e-20
Identities = 192/239 (80%)
Strand = Plus / Minus
Query: 1065 ttttaaagctcgtcctcttaataagaagatactttcaagtaaaggagatattggtgtttt 1124
||||||||||| ||||||||||| ||||||||||| |||||||| ||| |||||||| |
Sbjct: 623 ttttaaagctcagcctcttaataaaaagatactttctagtaaaggtgatgttggtgttgt 564
Query: 1125 ctggaacaggaagcaggaaactaccgttccaacagagtttaatttccatacagaaaagag 1184
| ||| || |||||||| | || || |||| |||||| |||| | || ||||||
Sbjct: 563 ccggagcatcaagcaggatataacagtgccaatggagtttgatttaaacaccgaaaaggt 504
Query: 1185 ggttcagcataacccaccaattgacctctttagcaagctatctctaacatctgaagttca 1244
|| ||| |||||||| |||||||| ||||| |||||| | ||||| |||||||||| ||
Sbjct: 503 ggctcaacataaccctccaattgaactcttcagcaagttgtctctgacatctgaagccca 444
Query: 1245 gtcaaacgatggatctcatttgaaaccgcctaggcattccagggtgttcagaaaggttt 1303
| ||| |||||| ||||||| |||| |||| |||||| || ||| |||||||||||
Sbjct: 443 gctaaatgatggagctcatttcaaactgcctcagcattctgggatgtgcagaaaggttt 385
>gnl|LJGI|TC58671 weakly similar to UniRef100_A7QK99 Cluster: Chromosome chr2
scaffold_112, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_112, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (30%)
Length = 833
Score = 83.8 bits (42), Expect = 3e-15
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 353 caatcggtgacagcttgaattctaaggctaaatctgctccaaggaagggttcaacactga 412
||||| |||| || |||||||||||||||||||||||| ||| | |||||| |||
Sbjct: 501 caatcagtgagagtttgaattctaaggctaaatctgctgtgccaaagaggtcaacattga 560
Query: 413 tgaaacctacagctagtcaattggctaagcaaaa 446
||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgaaacctacagctagtcagttggctaagcaaaa 594
Score = 52.0 bits (26), Expect = 9e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 537 tcaagctgccaagcgacagaaattagagggcggtctcttgcgcaaggttggtgatgtcaa 596
||||||| ||||| | || || |||||||| |||||||||||||||||| |||||| ||
Sbjct: 682 tcaagctcccaagaggcaaaagttagagggtggtctcttgcgcaaggttactgatgtgaa 741
Query: 597 gc 598
||
Sbjct: 742 gc 743
>gnl|LJGI|TC72689 weakly similar to UniRef100_A7QK99 Cluster: Chromosome chr2
scaffold_112, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_112, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 754
Score = 75.8 bits (38), Expect = 6e-13
Identities = 173/218 (79%)
Strand = Plus / Plus
Query: 1083 taataagaagatactttcaagtaaaggagatattggtgttttctggaacaggaagcagga 1142
|||||| ||||||||||| |||||||| ||| |||||||| || ||| || ||||||||
Sbjct: 1 taataaaaagatactttctagtaaaggtgatgttggtgttgtccggagcatcaagcagga 60
Query: 1143 aactaccgttccaacagagtttaatttccatacagaaaagagggttcagcataacccacc 1202
| || || |||| |||||| |||| | || |||||| || ||| |||||||| ||
Sbjct: 61 tataacagtgccaatggagtttgatttaaacaccgaaaaggtggctcaacataaccctcc 120
Query: 1203 aattgacctctttagcaagctatctctaacatctgaagttcagtcaaacgatggatctca 1262
|||||| ||||| |||||| | ||||| |||||||||| ||| ||| |||||| ||||
Sbjct: 121 aattgaactcttcagcaagttgtctctgacatctgaagcccagctaaatgatggagctca 180
Query: 1263 tttgaaaccgcctaggcattccagggtgttcagaaagg 1300
||| |||| |||| |||||| || ||| ||||||||
Sbjct: 181 tttcaaactgcctcagcattctgggatgtgcagaaagg 218