Miyakogusa Predicted Gene

Lj2g3v2001600.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v2001600.1 tr|G7JW40|G7JW40_MEDTR Matrix
metalloproteinase-28 OS=Medicago truncatula GN=MTR_5g012680 PE=4
SV=1,75.42,0,Metalloproteases ("zincins"), catalytic domain,NULL;
PGBD-like,Peptidoglycan binding-like; seg,NULL;,CUFF.38325.1
         (1090 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW631970 weakly similar to UniRef100_Q0IVR7 Cluster: Os...   737   0.0  

>gnl|LJGI|BW631970 weakly similar to UniRef100_Q0IVR7 Cluster: Os10g0557900 protein;
           n=3; Oryza sativa|Rep: Os10g0557900 protein - Oryza
           sativa subsp. japonica (Rice), partial (22%)
          Length = 486

 Score =  737 bits (372), Expect = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Plus

                                                                       
Query: 86  ccacgagaatcataccagaatccgtaaccgtcataacaacccaaactcgcaacgccacgt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ccacgagaatcataccagaatccgtaaccgtcataacaacccaaactcgcaacgccacgt 174

                                                                       
Query: 146 ggcacgacttctccaggttcctccacgccgagagaggcagccacgtcaccggcatggcgg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ggcacgacttctccaggttcctccacgccgagagaggcagccacgtcaccggcatggcgg 234

                                                                       
Query: 206 agctcaaaagctacttccaccgcttcggctacctcaccctgccggaaacgccgtcaaatt 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 agctcaaaagctacttccaccgcttcggctacctcaccctgccggaaacgccgtcaaatt 294

                                                                       
Query: 266 tcacagacaccttcgacactcagctcgagtccgctcttctcagttaccaaaaacgcctca 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcacagacaccttcgacactcagctcgagtccgctcttctcagttaccaaaaacgcctca 354

                                                                       
Query: 326 gcttgccgatcaccggaaaactcgacaaggacaccatctccgccatcgtcgctccgcggt 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcttgccgatcaccggaaaactcgacaaggacaccatctccgccatcgtcgctccgcggt 414

                                                                       
Query: 386 gcggcgtctccgacgctgccgcggcgcacggtctgcacaccaccggccactacgcttact 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gcggcgtctccgacgctgccgcggcgcacggtctgcacaccaccggccactacgcttact 474

                       
Query: 446 tcgacggcaagc 457
           ||||||||||||
Sbjct: 475 tcgacggcaagc 486