Miyakogusa Predicted Gene
- Lj2g3v2000290.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2000290.3 tr|Q8R4W0|Q8R4W0_CRIGR Acyl-CoA oxidase
(Fragment) OS=Cricetulus griseus PE=2 SV=1,50,2e-19,Acyl-CoA
dehydrogenase C-terminal domain-like,Acyl-CoA dehydrogenase/oxidase
C-terminal; ACYL-COA OX,CUFF.38551.3
(1167 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81324 similar to UniRef100_Q945U4 Cluster: Acyl-CoA o... 1277 0.0
gnl|LJGI|TC78869 similar to UniRef100_Q945U3 Cluster: Acyl-CoA o... 971 0.0
gnl|LJGI|TC79220 similar to UniRef100_Q945U3 Cluster: Acyl-CoA o... 509 e-143
gnl|LJGI|TC72435 weakly similar to UniRef100_A7QRC4 Cluster: Chr... 74 2e-12
gnl|LJGI|TC63371 weakly similar to UniRef100_A7QRC4 Cluster: Chr... 74 2e-12
>gnl|LJGI|TC81324 similar to UniRef100_Q945U4 Cluster: Acyl-CoA oxidase; n=1; Glycine
max|Rep: Acyl-CoA oxidase - Glycine max (Soybean),
partial (40%)
Length = 954
Score = 1277 bits (644), Expect = 0.0
Identities = 647/648 (99%)
Strand = Plus / Plus
Query: 520 ggtggtcatggttatcttaatagcagtggtcttcctgagctatttgcagtgtatgttcct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtggtcatggttatcttaatagcagtggtcttcctgagctatttgcagtgtatgttcct 60
Query: 580 gcttgcacttatgaaggagacaatactgtgctgcttttacaggtggcaaggcatcttgtg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttgcacttatgaaggagacaatactgtgctgcttttacaggtggcaaggcatcttgtg 120
Query: 640 aagactatttctcagctgggctctggaaataagcctggtggtactacagcttatttggct 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagactatttctcagctgggctctggaaataagcctggtggtactacagcttatttggct 180
Query: 700 cgagtggaacaattgatgcaatatcactctgatgttaaaaaagctgaggattggttgaag 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgagtggaacaattgatgcaatatcactctgatgttaaaaaagctgaggattggttgaag 240
Query: 760 cctaatgtagtggtggcagcattcgaagctagggctgctaggatgtctgttgcttgtgct 819
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctaatgtagtgatggcagcattcgaagctagggctgctaggatgtctgttgcttgtgct 300
Query: 820 caaaatcttagcaagttcactaatcctgaagagggttttcaagaacttacagctgatcta 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaaatcttagcaagttcactaatcctgaagagggttttcaagaacttacagctgatcta 360
Query: 880 gttgaggcagcaactgctcattgccagttaatcattgtttccaaatttattgataagttg 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttgaggcagcaactgctcattgccagttaatcattgtttccaaatttattgataagttg 420
Query: 940 cagaaagacatacctggaaagggtgtgaaacagcaattagaagttctttgcagcatttat 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagaaagacatacctggaaagggtgtgaaacagcaattagaagttctttgcagcatttat 480
Query: 1000 gctttgtctcttcttcataagcatctgggagattttctttccgctggctgcataaatcca 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctttgtctcttcttcataagcatctgggagattttctttccgctggctgcataaatcca 540
Query: 1060 ctacaaggatcacttgccaatgagcagctgaggtccttgtattcccaggttcgtcctaat 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctacaaggatcacttgccaatgagcagctgaggtccttgtattcccaggttcgtcctaat 600
Query: 1120 gcaattgcacttgttgatgcgtttaattacactgatcactaccttggt 1167
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaattgcacttgttgatgcgtttaattacactgatcactaccttggt 648
>gnl|LJGI|TC78869 similar to UniRef100_Q945U3 Cluster: Acyl-CoA oxidase; n=1; Glycine
max|Rep: Acyl-CoA oxidase - Glycine max (Soybean),
partial (54%)
Length = 1248
Score = 971 bits (490), Expect = 0.0
Identities = 490/490 (100%)
Strand = Plus / Plus
Query: 1 atgaaatttgggagtggagcatataataccatggataacggggttctaagatttgaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atgaaatttgggagtggagcatataataccatggataacggggttctaagatttgaccat 662
Query: 61 gttagaattccaaggaatcaaatgttaatgagggtctctcaggtaaccagagaaggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gttagaattccaaggaatcaaatgttaatgagggtctctcaggtaaccagagaaggaaaa 722
Query: 121 tatgtgcagtccaatgttccaagacaattagtttatggtaccatggtatatgtgagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tatgtgcagtccaatgttccaagacaattagtttatggtaccatggtatatgtgagacaa 782
Query: 181 gcaattgtgtctgatgcatcgattgctttgtcacgagcagtttgtattgctacaagatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gcaattgtgtctgatgcatcgattgctttgtcacgagcagtttgtattgctacaagatat 842
Query: 241 agtgctgttagaagacagtttggatcacataatggtggtcttgagtcgcaggtgattgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 agtgctgttagaagacagtttggatcacataatggtggtcttgagtcgcaggtgattgat 902
Query: 301 tacaagacacagcaggctaggctcttccctttgctagcttctacttatgctttcaggttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tacaagacacagcaggctaggctcttccctttgctagcttctacttatgctttcaggttt 962
Query: 361 gttagtgagtggctgagttggctttatacggatgtcacacaaagattacaagctggagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gttagtgagtggctgagttggctttatacggatgtcacacaaagattacaagctggagat 1022
Query: 421 ttttcaacattgcctgaggcacatgcatgcactgctggattgaaatcattgactacttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ttttcaacattgcctgaggcacatgcatgcactgctggattgaaatcattgactacttca 1082
Query: 481 atcgctgctg 490
||||||||||
Sbjct: 1083 atcgctgctg 1092
>gnl|LJGI|TC79220 similar to UniRef100_Q945U3 Cluster: Acyl-CoA oxidase; n=1; Glycine
max|Rep: Acyl-CoA oxidase - Glycine max (Soybean),
partial (35%)
Length = 948
Score = 509 bits (257), Expect = e-143
Identities = 476/549 (86%)
Strand = Plus / Plus
Query: 619 caggtggcaaggcatcttgtgaagactatttctcagctgggctctggaaataagcctggt 678
||||||||||||||||| | |||||||| |||||| || |||||||||| ||||| |||
Sbjct: 1 caggtggcaaggcatctcattaagactatctctcagttgagctctggaaaaaagcccggt 60
Query: 679 ggtactacagcttatttggctcgagtggaacaattgatgcaatatcactctgatgttaaa 738
|| || ||||||||| ||| ||| |||||||| ||||||||| || ||||||||| |
Sbjct: 61 gggacaacagcttatatgggacgactggaacaactgatgcaatttcgttctgatgttcag 120
Query: 739 aaagctgaggattggttgaagcctaatgtagtggtggcagcattcgaagctagggctgct 798
||||| ||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||
Sbjct: 121 aaagcggaggattggttgaagccaaatgtagtgctgggggcatttgaagctagggctgct 180
Query: 799 aggatgtctgttgcttgtgctcaaaatcttagcaagttcactaatcctgaagagggtttt 858
| || ||| |||| |||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 181 atgaagtcagttgtctgtgctaaaaatcttagcaagtttaccaatcctgaagagggtttt 240
Query: 859 caagaacttacagctgatctagttgaggcagcaactgctcattgccagttaatcattgtt 918
|||||||| |||||||||||| ||| ||||| ||||||||||||||| || |||||
Sbjct: 241 caagaactctcagctgatctagctgaagcagctgttgctcattgccagttgattgttgtt 300
Query: 919 tccaaatttattgataagttgcagaaagacatacctggaaagggtgtgaaacagcaatta 978
|||||||||||||| ||||||||| |||| ||||||||||| || ||||| ||||||||
Sbjct: 301 tccaaatttattgagaagttgcagcaagatatacctggaaatggagtgaaggagcaatta 360
Query: 979 gaagttctttgcagcatttatgctttgtctcttcttcataagcatctgggagattttctt 1038
||||||||||| ||| ||||||| |||| |||||||||||||||| |||| |||||||||
Sbjct: 361 gaagttctttgtagcgtttatgccttgtttcttcttcataagcatttgggtgattttctt 420
Query: 1039 tccgctggctgcataaatccactacaaggatcacttgccaatgagcagctgaggtccttg 1098
|| || ||||| || | ||| ||| || |||||||| ||||||||||||||||||| |
Sbjct: 421 tcagccggctgtatcactcccaaacagggttcacttgcaaatgagcagctgaggtcctcg 480
Query: 1099 tattcccaggttcgtcctaatgcaattgcacttgttgatgcgtttaattacactgatcac 1158
||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 481 tatgcgcaggttcgtcctaatgcaattgcgcttgttgatgcgtttaactacactgatcac 540
Query: 1159 taccttggt 1167
|||||||||
Sbjct: 541 taccttggt 549
>gnl|LJGI|TC72435 weakly similar to UniRef100_A7QRC4 Cluster: Chromosome chr13
scaffold_149, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_149, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (8%)
Length = 734
Score = 73.8 bits (37), Expect = 2e-12
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 575 ttcctgcttgcacttatgaaggagacaatactgtgctgcttttacaggt 623
||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 233 ttcctgcctgcacttataaaggagacaatattgtgctgcttttacaggt 281
>gnl|LJGI|TC63371 weakly similar to UniRef100_A7QRC4 Cluster: Chromosome chr13
scaffold_149, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_149, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 756
Score = 73.8 bits (37), Expect = 2e-12
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 575 ttcctgcttgcacttatgaaggagacaatactgtgctgcttttacaggt 623
||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 557 ttcctgcctgcacttataaaggagacaatattgtgctgcttttacaggt 509