Miyakogusa Predicted Gene

Lj2g3v1988750.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1988750.1 Non Chatacterized Hit- tr|F6HTE1|F6HTE1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,60.93,0,zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type;
coiled-coil,NULL; seg,NULL; PROTEIN BINDING / ZIN,CUFF.38271.1
         (945 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP077155 similar to UniRef100_A7PCG7 Cluster: Chromosom...   603   e-172
gnl|LJGI|TC77800 similar to UniRef100_A7PCG7 Cluster: Chromosome...    92   7e-18
gnl|LJGI|TC82385 homologue to UniRef100_Q8QTA4 Cluster: WSSV522;...    86   5e-16

>gnl|LJGI|BP077155 similar to UniRef100_A7PCG7 Cluster: Chromosome chr2 scaffold_11,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_11, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (24%)
          Length = 432

 Score =  603 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 642 gcaggcgaaggcgaaggagcaggaagccacggcggcgtcattgcaggcgcaactgcagcg 701
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcaggcgaaggcgaaggagcaggaagccacggcggcgtcattgcaggcgcaactgcagcg 373

                                                                       
Query: 702 cgctatcatgagcggcggagacggtgggttatcggaggatgctgaatcggcgtatgttga 761
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cgctatcatgagcggcggagacggtgggttatcggaggatgctgaatcggcgtatgttga 313

                                                                       
Query: 762 cccggagcgcgtggtggaggtgggtcctactcgtgaatgtaagggttgttggaagagagt 821
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cccggagcgcgtggtggaggtgggtcctactcgtgaatgtaagggttgttggaagagagt 253

                                                                       
Query: 822 ggcttcggtggtggtgttgccgtgtcgccatctatgcgtctgcacagaatgcgacgcaca 881
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggcttcggtggtggtgttgccgtgtcgccatctatgcgtctgcacagaatgcgacgcaca 193

                                                                       
Query: 882 attccgggcatgtcccgtttgcctcacactgaaaaattcaagcgttcaagtttatctatc 941
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 attccgggcatgtcccgtttgcctcacactgaaaaattcaagcgttcaagtttatctatc 133

               
Query: 942 ttag 945
           ||||
Sbjct: 132 ttag 129


>gnl|LJGI|TC77800 similar to UniRef100_A7PCG7 Cluster: Chromosome chr2 scaffold_11,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_11, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (79%)
          Length = 1552

 Score = 91.7 bits (46), Expect = 7e-18
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                       
Query: 544 cggctgagagagaaggaagccgagatggagaaagcgaaacgcaggaacgcagagttagaa 603
           |||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||| || ||
Sbjct: 823 cggctgagggagaaggaagccgaggtggagaaagccacgcgcaggaacgcggagctacaa 882

                                                             
Query: 604 gcgcgcgcagcgcagcttagcatggagtcgcagctatggcaggcgaaggc 653
           || ||||| |||||||| ||| ||||| ||||| | |||||||| |||||
Sbjct: 883 gcacgcgccgcgcagctgagcgtggaggcgcaggtgtggcaggccaaggc 932



 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 96/116 (82%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   atggctgttcatgctcaatacccatccaatgtactccttctaaacagcaagaaggggcaa 63
           ||||| ||||| |||||||| ||||||||||| ||||||||||||| ||  || ||||||
Sbjct: 250 atggccgttcaggctcaatatccatccaatgtcctccttctaaacaacagaaacgggcaa 309

                                                                   
Query: 64  gaagga---catgattgttcattgcaaccacaaccaggaggattcattgaacaatc 116
           |||| |   ||||| |  ||||| ||||||||||| |||||| | ||||| |||||
Sbjct: 310 gaagcacatcatgagtactcattacaaccacaacctggaggactaattgatcaatc 365


>gnl|LJGI|TC82385 homologue to UniRef100_Q8QTA4 Cluster: WSSV522; n=1; Shrimp white
           spot syndrome virus|Rep: WSSV522 - White spot syndrome
           virus (WSSV), partial (22%)
          Length = 510

 Score = 85.7 bits (43), Expect = 5e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 1   atgatggctgttcatgctcaatacccatccaatgtactccttc 43
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atgatggctgttcatgctcaatacccatccaatgtactccttc 510