Miyakogusa Predicted Gene
- Lj2g3v1984950.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1984950.1 Non Chatacterized Hit- tr|I3SGA6|I3SGA6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,93.18,0,no
description,RNA polymerase Rpb7, N-terminal; no description,Nucleic
acid-binding, OB-fold; DNA-DI,CUFF.38217.1
(531 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57712 homologue to UniRef100_P46279 Cluster: DNA-dire... 759 0.0
gnl|LJGI|TC63820 homologue to UniRef100_P46279 Cluster: DNA-dire... 466 e-131
>gnl|LJGI|TC57712 homologue to UniRef100_P46279 Cluster: DNA-directed RNA polymerase
II subunit RPB7; n=1; Glycine max|Rep: DNA-directed RNA
polymerase II subunit RPB7 - Glycine max (Soybean),
partial (98%)
Length = 920
Score = 759 bits (383), Expect = 0.0
Identities = 491/527 (93%)
Strand = Plus / Plus
Query: 1 atgtttttccacatagtgctggaacgaaatatgcagctgcacccacgttactttggtcgt 60
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct: 153 atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt 212
Query: 61 aatcttcgtgataatcttgttgccaagttaatgaaagatgttgaaggcacatgcagcggt 120
||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |||
Sbjct: 213 aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt 272
Query: 121 cgacatggatttgtggtggcagttacagggatagaagacattggaaaagggttaattctt 180
|| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct: 273 cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt 332
Query: 181 gatggtactgggtctgtgacatttccggttaaataccgatgtgttgtcttcagaccattt 240
|||||||| |||| ||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct: 333 gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt 392
Query: 241 aagggagaagttttagaagctgttgttaccatggtgaacaagatgggattttttgctgaa 300
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 393 aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa 452
Query: 301 gctggacctgttcaaatcttcgtttcaaaccatttgattccagatgatatggagttccag 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 453 gctggacctgttcaaatcttcgtctcaaaccatttgattccagatgatatggagttccag 512
Query: 361 tctggagatatgccaaattacactacttcagatgcatcagttaagattcagaaagatagt 420
||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 513 tctggtgacatgccaaattacactacttcagatggatcagttaagattcagaaagatagt 572
Query: 421 gaagtgagacttaagataattgggactcgagtagacgctactgaaattttctgcatcggt 480
||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct: 573 gaagtgagactaaagataattgggactcgagtggatgctaccgaaattttctgcatagga 632
Query: 481 accattaaagatgatttcttgggtgtgatcaacgaccctgtaacaat 527
||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 633 accataaaagatgatttcttgggtgtgatcaacgaccctgtagcaat 679
>gnl|LJGI|TC63820 homologue to UniRef100_P46279 Cluster: DNA-directed RNA polymerase
II subunit RPB7; n=1; Glycine max|Rep: DNA-directed RNA
polymerase II subunit RPB7 - Glycine max (Soybean),
partial (73%)
Length = 782
Score = 466 bits (235), Expect = e-131
Identities = 310/335 (92%)
Strand = Plus / Plus
Query: 1 atgtttttccacatagtgctggaacgaaatatgcagctgcacccacgttactttggtcgt 60
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct: 150 atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt 209
Query: 61 aatcttcgtgataatcttgttgccaagttaatgaaagatgttgaaggcacatgcagcggt 120
||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |||
Sbjct: 210 aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt 269
Query: 121 cgacatggatttgtggtggcagttacagggatagaagacattggaaaagggttaattctt 180
|| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct: 270 cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt 329
Query: 181 gatggtactgggtctgtgacatttccggttaaataccgatgtgttgtcttcagaccattt 240
|||||||| |||| ||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct: 330 gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt 389
Query: 241 aagggagaagttttagaagctgttgttaccatggtgaacaagatgggattttttgctgaa 300
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 390 aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa 449
Query: 301 gctggacctgttcaaatcttcgtttcaaaccattt 335
||||||||||||||||||||||| |||||||||||
Sbjct: 450 gctggacctgttcaaatcttcgtctcaaaccattt 484
Score = 87.7 bits (44), Expect = 6e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 468 tttctgcatcggtaccattaaagatgatttcttgggtgtgatcaacgaccctgtaacaat 527
||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 482 tttctgcataggaaccataaaagatgatttcttgggtgtgatcaacgaccctgtagcaat 541