Miyakogusa Predicted Gene

Lj2g3v1968430.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1968430.2 Non Chatacterized Hit- tr|D3AH31|D3AH31_9CLOT
Putative F5/8 type C domain protein OS=Clostridium
hat,32.54,0.00000000000002,seg,NULL; Glyco_hydro_43,Glycoside
hydrolase, family 43;
Arabinanase/levansucrase/invertase,Glycosyl,CUFF.38134.2
         (1401 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|CB827977 similar to UniRef100_Q8W1E6 Cluster: AT5g67540...   143   3e-33

>gnl|LJGI|CB827977 similar to UniRef100_Q8W1E6 Cluster: AT5g67540/K9I9_10; n=2;
            Arabidopsis thaliana|Rep: AT5g67540/K9I9_10 - Arabidopsis
            thaliana (Mouse-ear cress), partial (15%)
          Length = 370

 Score =  143 bits (72), Expect = 3e-33
 Identities = 229/279 (82%), Gaps = 3/279 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1121 catgcatgggagggaacaaaatgtttcgacttacaactttctttgctcagagcacatttg 1180
            ||||||| |||||||||||||||||| || |  | |||||| |||||||||| |  ||||
Sbjct: 1    catgcattggagggaacaaaatgtttagagtcgctactttccttgctcagagtagttttg 60

                                                                        
Query: 1181 tgcttccgattcctgggttccctggttcgtttattttcatggctgatcggtggaatccag 1240
            |||||||  | |||  ||| ||||||||||||||||||||||| ||| | |||||||| |
Sbjct: 61   tgcttccactccctcagtttcctggttcgtttattttcatggcggatagatggaatcctg 120

                                                                        
Query: 1241 ctgacttaaaggactcgagatatgtatggttgcccttgatagtggcaggacctgctgatc 1300
             | | ||||  ||||| |||||||| |||||||| ||||||||||| ||| |||  || |
Sbjct: 121  ttcagttaagagactcaagatatgtgtggttgcctttgatagtggctggaactg--gacc 178

                                                                        
Query: 1301 agcctctggagtacagttttgaattcccattatggtcaagggtgtctatctattggcata 1360
             | ||   || ||||||| || |||||||||||||||||| || ||||||||||||||||
Sbjct: 179  tg-ctgatgaatacagttctggattcccattatggtcaagagtttctatctattggcata 237

                                                   
Query: 1361 ggaaatggagactgccacaggggttgagcagcttcaaat 1399
            ||| ||||| |||||| ||||| | |||||  |||||||
Sbjct: 238  ggagatggaaactgcctcagggatggagcacattcaaat 276