Miyakogusa Predicted Gene
- Lj2g3v1876630.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1876630.1 Non Chatacterized Hit- tr|F6HHL2|F6HHL2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.27,1e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; CG3594-PA,NULL; FAMILY NOT NAM,CUFF.37999.1
(1110 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70994 similar to UniRef100_Q0JG34 Cluster: Os01g09458... 2151 0.0
gnl|LJGI|TC74072 similar to UniRef100_A7PLA4 Cluster: Chromosome... 333 1e-90
gnl|LJGI|GO035401 similar to UniRef100_A2IBF1 Cluster: RNA-bindi... 287 7e-77
>gnl|LJGI|TC70994 similar to UniRef100_Q0JG34 Cluster: Os01g0945800 protein; n=2; Oryza
sativa Japonica Group|Rep: Os01g0945800 protein - Oryza
sativa subsp. japonica (Rice), partial (77%)
Length = 1609
Score = 2151 bits (1085), Expect = 0.0
Identities = 1102/1110 (99%)
Strand = Plus / Plus
Query: 1 atggagcaaaggaagcttgtggttttgggtatcccatgggaagtggatactgatggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atggagcaaaggaagcttgtggttttgggtatcccatgggaagtggatactgatggcttg 329
Query: 61 aaagaatatatgagcaaatttggtgagctggaagattgtattgttatgaaggagcgggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaagaatatatgagcaaatttggtgagctggaagattgtattgttatgaaggagcgggca 389
Query: 121 actggtcggtctcgaggttttggatatgttacatttacatcagtggatgatgctaagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 actggtcggtctcgaggttttggatatgttacatttacatcagtggatgatgctaagaat 449
Query: 181 gtattatccattgaacacaatctgggtaacaggatgctggaagtcaaagtggccacacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtattatccattgaacacaatctgggtaacaggatgctggaagtcaaagtggccacacca 509
Query: 241 aaggaggagatgaaggcaccggtnnnnnnngttaacagaatatttatagccagaatccca 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 510 aaggaggagatgaaggcaccggtaaaaaaagttaacagaatatttatagccagaatccca 569
Query: 301 ccatcagtaacagaagcaaccttcagaagtcattttgagaaatatggtgatattacagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccatcagtaacagaagcaaccttcagaagtcattttgagaaatatggtgatattacagat 629
Query: 361 ctatacatgccaaaggatcaaagatcaaaaacgcatcgtggaattggttttatcacttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctatacatgccaaaggatcaaagatcaaaaacgcatcgtggaattggttttatcacttat 689
Query: 421 gcaaatgcagattctgtagagaatttgatgaaagaaacccatgaactggaaggttctact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gcaaatgcagattctgtagagaatttgatgaaagaaacccatgaactggaaggttctact 749
Query: 481 gtggtcgttgatcgagcaacgcctaaggaagatgatttcaagccaattgggagaatgcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gtggtcgttgatcgagcaacgcctaaggaagatgatttcaagccaattgggagaatgcca 809
Query: 541 cagggaggatcaatggggagaatgtcacagggaggatatggtgcatacaatgcatatatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cagggaggatcaatggggagaatgtcacagggaggatatggtgcatacaatgcatatatt 869
Query: 601 tctgcaacaactagatacgcagcactaggtgctcctactttatatgacaatccgggttca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tctgcaacaactagatacgcagcactaggtgctcctactttatatgacaatccgggttca 929
Query: 661 gtttatggaaggggagaacctgctcgtgaagtgggcaaaaagatttttgttggtcatctt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gtttatggaaggggagaacctgctcgtgaagtgggcaaaaagatttttgttggtcatctt 989
Query: 721 ccccaagaggctaccactgaggatcttcgccagtattttggaagatttggccatatatta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ccccaagaggctaccactgaggatcttcgccagtattttggaagatttggccatatatta 1049
Query: 781 gatgtttatattcccagggatgccaagagatcaggtcatagaggttttggttttgtgact 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gatgtttatattcccagggatgccaagagatcaggtcatagaggttttggttttgtgact 1109
Query: 841 tttgctgaagatggtgttgcggatcgcgtcgctcgaagacctcatgagatttgtggacac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 tttgctgaagatggtgttgcggatcgcgtcgctcgaagacctcatgagatttgtggacac 1169
Query: 901 caggtggccatagattcagcaacacctcttgatgatgcagggcccagtgggaattttatg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 caggtggccatagattcagcaacacctcttgatgatgcagggcccagtgggaattttatg 1229
Query: 961 ttgaatagcatggattcttttgggggatttggtggtcctgtgcgaccttatgggagaatg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 ttgaatagcatggattcttttgggggatttggtggtcctgtgcgaccttatgggagaatg 1289
Query: 1021 tatggcagcctagactacgatgattggggttatggagttcccagggggaggccgccatca 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 tatggcagcctagactacgatgattggggttatggagttcccagggggaggccgccatca 1349
Query: 1081 agagcggattggaggtatagaccatactaa 1110
||||||||||||||||||| ||||||||||
Sbjct: 1350 agagcggattggaggtataaaccatactaa 1379
>gnl|LJGI|TC74072 similar to UniRef100_A7PLA4 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 808
Score = 333 bits (168), Expect = 1e-90
Identities = 355/416 (85%), Gaps = 6/416 (1%)
Strand = Plus / Plus
Query: 697 aaaaagatttttgttggtcatcttccccaagaggctaccactgaggatcttcgccagtat 756
|||||||||||||| || | |||||||| ||| || || || |||||||| || |||
Sbjct: 44 aaaaagatttttgtcggccgtcttcccccagaagcaactgtggaagatcttcgtcaatat 103
Query: 757 tttggaagatttggccatatattagatgtttatattcccagggatgccaagagatcaggt 816
|||| ||||||||||||||||||||||||||||||||||| ||| | |||||| |||||
Sbjct: 104 tttgcaagatttggccatatattagatgtttatattcccaaagatcctaagagagcaggt 163
Query: 817 catagaggttttggttttgtgacttttgctgaagatggtgttgcggatcgcgtcgctcga 876
|||||||||||||| ||||| ||||||| |||||| |||||||| || || ||| |||||
Sbjct: 164 catagaggttttggatttgttacttttgttgaagaaggtgttgcagaccgtgtctctcga 223
Query: 877 agacctcatgagatttgtggacaccaggtggccatagattcagcaacacctcttgatgat 936
|| ||||||||||||||||| || ||||||| ||||||||||| || ||| |||||||
Sbjct: 224 aggcctcatgagatttgtggtcaagaggtggcaatagattcagccactcctgttgatgag 283
Query: 937 gcagggcccagtgggaattttatgttgaatagcatggattcttt---tgggggatttggt 993
|| |||||||||||||| |||||| |||||||| |||||||||| |||||||| ||
Sbjct: 284 gctgggcccagtgggaactttatgatgaatagcgtggattcttttggtgggggatacggc 343
Query: 994 ggtcctgtgcgaccttatgggagaatgtatggcagcctagactacgatgattggggttat 1053
|||||| ||||| |||||||||| |||||||| ||| |||||| |||||||||||||||
Sbjct: 344 ggtcctttgcgatcttatgggaggatgtatggtagcttagactttgatgattggggttat 403
Query: 1054 ggagttcccagggggaggccgccatcaagagcggattggaggtatagaccatacta 1109
|||| |||| | ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 404 ggagctccccgtgggag---accatcaagagcggattggaggtataggccatacta 456
>gnl|LJGI|GO035401 similar to UniRef100_A2IBF1 Cluster: RNA-binding protein; n=1;
Brassica juncea|Rep: RNA-binding protein - Brassica
juncea (Leaf mustard) (Indian mustard), partial (64%)
Length = 361
Score = 287 bits (145), Expect = 7e-77
Identities = 295/346 (85%), Gaps = 1/346 (0%)
Strand = Plus / Plus
Query: 181 gtattatccattgaacacaatctgggtaacaggatgctggaagtcaaagtggccacacca 240
|||||||| | |||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 12 gtattatcaagtgaacatatgctgggtaataggatgctggaagtcaaagtggccacacca 71
Query: 241 aaggaggagatgaaggcaccggtnnnnnnn-gttaacagaatatttatagccagaatccc 299
||||||||||||| |||||||| ||||||||||||||| | ||| | || ||
Sbjct: 72 aaggaggagatgagggcaccggccaaaaaaagttaacagaatatttgtggcccggattcc 131
Query: 300 accatcagtaacagaagcaaccttcagaagtcattttgagaaatatggtgatattacaga 359
|| ||||||||||||| |||| || |||||| |||||||||| |||||||| || |||||
Sbjct: 132 actatcagtaacagaaccaacttttagaagttattttgagaagtatggtgagataacaga 191
Query: 360 tctatacatgccaaaggatcaaagatcaaaaacgcatcgtggaattggttttatcactta 419
| | |||||||||||||||||| | ||||| | ||||||||||||||||||| ||||||
Sbjct: 192 tttgtacatgccaaaggatcaagggtcaaagatgcatcgtggaattggttttgtcacttt 251
Query: 420 tgcaaatgcagattctgtagagaatttgatgaaagaaacccatgaactggaaggttctac 479
||||||||| | ||||| |||| ||||||| ||||||||||||||||| ||||||| |
Sbjct: 252 cgcaaatgcaaaatctgtggagagtttgatgtcagaaacccatgaactgggaggttctgc 311
Query: 480 tgtggtcgttgatcgagcaacgcctaaggaagatgatttcaagcca 525
|||||| ||||||||||| || |||||||| ||||| |||||||||
Sbjct: 312 tgtggtggttgatcgagccacccctaaggatgatgacttcaagcca 357