Miyakogusa Predicted Gene

Lj2g3v1876630.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1876630.1 Non Chatacterized Hit- tr|F6HHL2|F6HHL2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.27,1e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; CG3594-PA,NULL; FAMILY NOT NAM,CUFF.37999.1
         (1110 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70994 similar to UniRef100_Q0JG34 Cluster: Os01g09458...  2151   0.0  
gnl|LJGI|TC74072 similar to UniRef100_A7PLA4 Cluster: Chromosome...   333   1e-90
gnl|LJGI|GO035401 similar to UniRef100_A2IBF1 Cluster: RNA-bindi...   287   7e-77

>gnl|LJGI|TC70994 similar to UniRef100_Q0JG34 Cluster: Os01g0945800 protein; n=2; Oryza
            sativa Japonica Group|Rep: Os01g0945800 protein - Oryza
            sativa subsp. japonica (Rice), partial (77%)
          Length = 1609

 Score = 2151 bits (1085), Expect = 0.0
 Identities = 1102/1110 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggagcaaaggaagcttgtggttttgggtatcccatgggaagtggatactgatggcttg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270  atggagcaaaggaagcttgtggttttgggtatcccatgggaagtggatactgatggcttg 329

                                                                        
Query: 61   aaagaatatatgagcaaatttggtgagctggaagattgtattgttatgaaggagcgggca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330  aaagaatatatgagcaaatttggtgagctggaagattgtattgttatgaaggagcgggca 389

                                                                        
Query: 121  actggtcggtctcgaggttttggatatgttacatttacatcagtggatgatgctaagaat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390  actggtcggtctcgaggttttggatatgttacatttacatcagtggatgatgctaagaat 449

                                                                        
Query: 181  gtattatccattgaacacaatctgggtaacaggatgctggaagtcaaagtggccacacca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450  gtattatccattgaacacaatctgggtaacaggatgctggaagtcaaagtggccacacca 509

                                                                        
Query: 241  aaggaggagatgaaggcaccggtnnnnnnngttaacagaatatttatagccagaatccca 300
            |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 510  aaggaggagatgaaggcaccggtaaaaaaagttaacagaatatttatagccagaatccca 569

                                                                        
Query: 301  ccatcagtaacagaagcaaccttcagaagtcattttgagaaatatggtgatattacagat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  ccatcagtaacagaagcaaccttcagaagtcattttgagaaatatggtgatattacagat 629

                                                                        
Query: 361  ctatacatgccaaaggatcaaagatcaaaaacgcatcgtggaattggttttatcacttat 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  ctatacatgccaaaggatcaaagatcaaaaacgcatcgtggaattggttttatcacttat 689

                                                                        
Query: 421  gcaaatgcagattctgtagagaatttgatgaaagaaacccatgaactggaaggttctact 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  gcaaatgcagattctgtagagaatttgatgaaagaaacccatgaactggaaggttctact 749

                                                                        
Query: 481  gtggtcgttgatcgagcaacgcctaaggaagatgatttcaagccaattgggagaatgcca 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  gtggtcgttgatcgagcaacgcctaaggaagatgatttcaagccaattgggagaatgcca 809

                                                                        
Query: 541  cagggaggatcaatggggagaatgtcacagggaggatatggtgcatacaatgcatatatt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  cagggaggatcaatggggagaatgtcacagggaggatatggtgcatacaatgcatatatt 869

                                                                        
Query: 601  tctgcaacaactagatacgcagcactaggtgctcctactttatatgacaatccgggttca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  tctgcaacaactagatacgcagcactaggtgctcctactttatatgacaatccgggttca 929

                                                                        
Query: 661  gtttatggaaggggagaacctgctcgtgaagtgggcaaaaagatttttgttggtcatctt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  gtttatggaaggggagaacctgctcgtgaagtgggcaaaaagatttttgttggtcatctt 989

                                                                        
Query: 721  ccccaagaggctaccactgaggatcttcgccagtattttggaagatttggccatatatta 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  ccccaagaggctaccactgaggatcttcgccagtattttggaagatttggccatatatta 1049

                                                                        
Query: 781  gatgtttatattcccagggatgccaagagatcaggtcatagaggttttggttttgtgact 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gatgtttatattcccagggatgccaagagatcaggtcatagaggttttggttttgtgact 1109

                                                                        
Query: 841  tttgctgaagatggtgttgcggatcgcgtcgctcgaagacctcatgagatttgtggacac 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 tttgctgaagatggtgttgcggatcgcgtcgctcgaagacctcatgagatttgtggacac 1169

                                                                        
Query: 901  caggtggccatagattcagcaacacctcttgatgatgcagggcccagtgggaattttatg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 caggtggccatagattcagcaacacctcttgatgatgcagggcccagtgggaattttatg 1229

                                                                        
Query: 961  ttgaatagcatggattcttttgggggatttggtggtcctgtgcgaccttatgggagaatg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 ttgaatagcatggattcttttgggggatttggtggtcctgtgcgaccttatgggagaatg 1289

                                                                        
Query: 1021 tatggcagcctagactacgatgattggggttatggagttcccagggggaggccgccatca 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 tatggcagcctagactacgatgattggggttatggagttcccagggggaggccgccatca 1349

                                          
Query: 1081 agagcggattggaggtatagaccatactaa 1110
            ||||||||||||||||||| ||||||||||
Sbjct: 1350 agagcggattggaggtataaaccatactaa 1379


>gnl|LJGI|TC74072 similar to UniRef100_A7PLA4 Cluster: Chromosome chr7 scaffold_20,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr7 scaffold_20, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (71%)
          Length = 808

 Score =  333 bits (168), Expect = 1e-90
 Identities = 355/416 (85%), Gaps = 6/416 (1%)
 Strand = Plus / Plus

                                                                        
Query: 697  aaaaagatttttgttggtcatcttccccaagaggctaccactgaggatcttcgccagtat 756
            |||||||||||||| || | |||||||| ||| || ||    || |||||||| || |||
Sbjct: 44   aaaaagatttttgtcggccgtcttcccccagaagcaactgtggaagatcttcgtcaatat 103

                                                                        
Query: 757  tttggaagatttggccatatattagatgtttatattcccagggatgccaagagatcaggt 816
            |||| |||||||||||||||||||||||||||||||||||  ||| | |||||| |||||
Sbjct: 104  tttgcaagatttggccatatattagatgtttatattcccaaagatcctaagagagcaggt 163

                                                                        
Query: 817  catagaggttttggttttgtgacttttgctgaagatggtgttgcggatcgcgtcgctcga 876
            |||||||||||||| ||||| ||||||| |||||| |||||||| || || ||| |||||
Sbjct: 164  catagaggttttggatttgttacttttgttgaagaaggtgttgcagaccgtgtctctcga 223

                                                                        
Query: 877  agacctcatgagatttgtggacaccaggtggccatagattcagcaacacctcttgatgat 936
            || ||||||||||||||||| ||  ||||||| ||||||||||| || ||| ||||||| 
Sbjct: 224  aggcctcatgagatttgtggtcaagaggtggcaatagattcagccactcctgttgatgag 283

                                                                        
Query: 937  gcagggcccagtgggaattttatgttgaatagcatggattcttt---tgggggatttggt 993
            || |||||||||||||| |||||| |||||||| ||||||||||   ||||||||  || 
Sbjct: 284  gctgggcccagtgggaactttatgatgaatagcgtggattcttttggtgggggatacggc 343

                                                                        
Query: 994  ggtcctgtgcgaccttatgggagaatgtatggcagcctagactacgatgattggggttat 1053
            |||||| ||||| |||||||||| |||||||| ||| ||||||  |||||||||||||||
Sbjct: 344  ggtcctttgcgatcttatgggaggatgtatggtagcttagactttgatgattggggttat 403

                                                                    
Query: 1054 ggagttcccagggggaggccgccatcaagagcggattggaggtatagaccatacta 1109
            |||| |||| | |||||    |||||||||||||||||||||||||| ||||||||
Sbjct: 404  ggagctccccgtgggag---accatcaagagcggattggaggtataggccatacta 456


>gnl|LJGI|GO035401 similar to UniRef100_A2IBF1 Cluster: RNA-binding protein; n=1;
           Brassica juncea|Rep: RNA-binding protein - Brassica
           juncea (Leaf mustard) (Indian mustard), partial (64%)
          Length = 361

 Score =  287 bits (145), Expect = 7e-77
 Identities = 295/346 (85%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 181 gtattatccattgaacacaatctgggtaacaggatgctggaagtcaaagtggccacacca 240
           |||||||| | |||||| |  |||||||| ||||||||||||||||||||||||||||||
Sbjct: 12  gtattatcaagtgaacatatgctgggtaataggatgctggaagtcaaagtggccacacca 71

                                                                       
Query: 241 aaggaggagatgaaggcaccggtnnnnnnn-gttaacagaatatttatagccagaatccc 299
           ||||||||||||| ||||||||         ||||||||||||||| | ||| | || ||
Sbjct: 72  aaggaggagatgagggcaccggccaaaaaaagttaacagaatatttgtggcccggattcc 131

                                                                       
Query: 300 accatcagtaacagaagcaaccttcagaagtcattttgagaaatatggtgatattacaga 359
           || ||||||||||||| |||| || |||||| |||||||||| |||||||| || |||||
Sbjct: 132 actatcagtaacagaaccaacttttagaagttattttgagaagtatggtgagataacaga 191

                                                                       
Query: 360 tctatacatgccaaaggatcaaagatcaaaaacgcatcgtggaattggttttatcactta 419
           | | |||||||||||||||||| | ||||| | ||||||||||||||||||| |||||| 
Sbjct: 192 tttgtacatgccaaaggatcaagggtcaaagatgcatcgtggaattggttttgtcacttt 251

                                                                       
Query: 420 tgcaaatgcagattctgtagagaatttgatgaaagaaacccatgaactggaaggttctac 479
            ||||||||| | ||||| |||| |||||||  ||||||||||||||||| ||||||| |
Sbjct: 252 cgcaaatgcaaaatctgtggagagtttgatgtcagaaacccatgaactgggaggttctgc 311

                                                         
Query: 480 tgtggtcgttgatcgagcaacgcctaaggaagatgatttcaagcca 525
           |||||| ||||||||||| || |||||||| ||||| |||||||||
Sbjct: 312 tgtggtggttgatcgagccacccctaaggatgatgacttcaagcca 357