Miyakogusa Predicted Gene
- Lj2g3v1779790.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1779790.1 tr|E1C9U6|E1C9U6_PHYPA AtGAI1 GRAS E3 ubiquitin
ligase protein OS=Physcomitrella patens subsp.
paten,28.38,9e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
GRAS,Transcription factor GRAS; seg,NULL,CUFF.37822.1
(904 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV766135 similar to UniRef100_Q8GX15 Cluster: Ap2 SCARE... 404 e-112
gnl|LJGI|AV774473 weakly similar to UniRef100_A7PUZ1 Cluster: Ch... 212 3e-54
gnl|LJGI|TC81205 similar to UniRef100_A7PUZ1 Cluster: Chromosome... 78 1e-13
>gnl|LJGI|AV766135 similar to UniRef100_Q8GX15 Cluster: Ap2 SCARECROW-like protein;
n=1; Arabidopsis thaliana|Rep: Ap2 SCARECROW-like
protein - Arabidopsis thaliana (Mouse-ear cress),
partial (12%)
Length = 300
Score = 404 bits (204), Expect = e-112
Identities = 207/208 (99%)
Strand = Plus / Minus
Query: 697 gcgggaaggcggatgccgccgtggagggaggcgttttactgtgctgggatgaggccggtt 756
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcgggaaggcgaatgccgccgtggagggaggcgttttactgtgctgggatgaggccggtt 241
Query: 757 cagttaagccagttcgcggattttcaagcggagtgtttgttggccaagtcacaaataagg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagttaagccagttcgcggattttcaagcggagtgtttgttggccaagtcacaaataagg 181
Query: 817 ggattccacgtggctaaacgccaggctgagctggtgcttttctggcatgagcgggccatg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ggattccacgtggctaaacgccaggctgagctggtgcttttctggcatgagcgggccatg 121
Query: 877 gttgccacgtcagcttggcgttgttaag 904
||||||||||||||||||||||||||||
Sbjct: 120 gttgccacgtcagcttggcgttgttaag 93
>gnl|LJGI|AV774473 weakly similar to UniRef100_A7PUZ1 Cluster: Chromosome chr4
scaffold_32, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr4 scaffold_32, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 449
Score = 212 bits (107), Expect = 3e-54
Identities = 170/191 (89%)
Strand = Plus / Minus
Query: 712 ccgccgtggagggaggcgttttactgtgctgggatgaggccggttcagttaagccagttc 771
||||||||| | |||||||||||| | || |||||||||||||| ||||| |||||||||
Sbjct: 366 ccgccgtggcgagaggcgttttacggcgccgggatgaggccggtgcagttgagccagttc 307
Query: 772 gcggattttcaagcggagtgtttgttggccaagtcacaaataaggggattccacgtggct 831
||||||||||| |||||||||||||| || ||| || || ||||| |||||||||||
Sbjct: 306 gcggattttcaggcggagtgtttgttagcgaaggtgcagatcagggggttccacgtggcg 247
Query: 832 aaacgccaggctgagctggtgcttttctggcatgagcgggccatggttgccacgtcagct 891
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 246 aaacggcaggctgagttggtgcttttctggcatgagcgggccatgcttgccacgtcagct 187
Query: 892 tggcgttgtta 902
||||| |||||
Sbjct: 186 tggcggtgtta 176
>gnl|LJGI|TC81205 similar to UniRef100_A7PUZ1 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 414
Score = 77.8 bits (39), Expect = 1e-13
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 30 cttcaaggcgttctccggaatctcaccgatcccgatgttctccatcttcaccaccaatca 89
||||||||| || || ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 289 cttcaaggccttttcaggaatttcaccgatcccgatgttttccatctttaccaccaatca 348
Query: 90 agc 92
|||
Sbjct: 349 agc 351