Miyakogusa Predicted Gene
- Lj2g3v1757130.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1757130.2 tr|G7KDL7|G7KDL7_MEDTR DNA-3-methyladenine
glycosylase OS=Medicago truncatula GN=MTR_5g020300 PE=4
S,64.21,0,FAMILY NOT NAMED,NULL; HhH-GPD,HhH-GPD domain; no
description,DNA glycosylase; no description,Helix-,CUFF.37792.2
(861 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58653 1451 0.0
gnl|LJGI|TC72046 weakly similar to UniRef100_Q5ZMJ9 Cluster: Ser... 763 0.0
gnl|LJGI|BP062232 131 8e-30
gnl|LJGI|TC66555 similar to UniRef100_UPI000034F541 Cluster: HhH... 74 2e-12
>gnl|LJGI|TC58653
Length = 776
Score = 1451 bits (732), Expect = 0.0
Identities = 735/736 (99%)
Strand = Plus / Plus
Query: 1 atgaagcgaacacgatcccaaacaaaaccctattcaaatccaaacgattcactttcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 atgaagcgaacacgatcccaaacaaaaccctattcaaatccaaacgattcactttcctct 100
Query: 61 tccaaaatctccttccgcgcgcgaaaaatccgacgaacccccctcatcaccaacaaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tccaaaatctccttccgcgcgcgaaaaatccgacgaacccccctcatcaccaacaaaaac 160
Query: 121 cctaacccagaaccagagacttcatcaaaaccctctcccaccaccatctcaaagccgtta 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 161 cctaacccagaaccagagacttcgtcaaaaccctctcccaccaccatctcaaagccgtta 220
Query: 181 accgccaccggcgaaatcgaagccgccctcaaccacctccgcgccgccgatcccctctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 accgccaccggcgaaatcgaagccgccctcaaccacctccgcgccgccgatcccctctta 280
Query: 241 gccaactgcatcgactctctccctcctcctcacttctcaaacgacgtcgtcgtcaccccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gccaactgcatcgactctctccctcctcctcacttctcaaacgacgtcgtcgtcaccccc 340
Query: 301 ttcttctccctcacgaagagcatcatctcccagcaactctccaacaaagcagcctccgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttcttctccctcacgaagagcatcatctcccagcaactctccaacaaagcagcctccgcc 400
Query: 361 atcgaatcccgcttcgtctccctctgcggcggccgcgattcggttctccccgacgtcgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atcgaatcccgcttcgtctccctctgcggcggccgcgattcggttctccccgacgtcgtt 460
Query: 421 ttgtccttgtctcccgttcagctccggcaggttggaatctccggacccaaagcgacttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgtccttgtctcccgttcagctccggcaggttggaatctccggacccaaagcgacttac 520
Query: 481 ctccacgacctcgccaccaagtacatcgatgggattctctcggattctactatcctgcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctccacgacctcgccaccaagtacatcgatgggattctctcggattctactatcctgcaa 580
Query: 541 atggacgatgagacgctgcacgagaagcttaccttggttaagggaattgggccttggtct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atggacgatgagacgctgcacgagaagcttaccttggttaagggaattgggccttggtct 640
Query: 601 gttcacatgttcatgattttcacgcttcaccgccctgatgttcttcctgttggggacctc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gttcacatgttcatgattttcacgcttcaccgccctgatgttcttcctgttggggacctc 700
Query: 661 gttgttcggagaggagtggagcgattgtatggacttaaggcattgcctgctccttccctg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gttgttcggagaggagtggagcgattgtatggacttaaggcattgcctgctccttccctg 760
Query: 721 atggaacgattgtgcc 736
||||||||||||||||
Sbjct: 761 atggaacgattgtgcc 776
>gnl|LJGI|TC72046 weakly similar to UniRef100_Q5ZMJ9 Cluster: Serine/arginine
repetitive matrix protein 1; n=1; Gallus gallus|Rep:
Serine/arginine repetitive matrix protein 1 - Gallus
gallus (Chicken), partial (4%)
Length = 554
Score = 763 bits (385), Expect = 0.0
Identities = 385/385 (100%)
Strand = Plus / Plus
Query: 1 atgaagcgaacacgatcccaaacaaaaccctattcaaatccaaacgattcactttcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 atgaagcgaacacgatcccaaacaaaaccctattcaaatccaaacgattcactttcctct 229
Query: 61 tccaaaatctccttccgcgcgcgaaaaatccgacgaacccccctcatcaccaacaaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tccaaaatctccttccgcgcgcgaaaaatccgacgaacccccctcatcaccaacaaaaac 289
Query: 121 cctaacccagaaccagagacttcatcaaaaccctctcccaccaccatctcaaagccgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cctaacccagaaccagagacttcatcaaaaccctctcccaccaccatctcaaagccgtta 349
Query: 181 accgccaccggcgaaatcgaagccgccctcaaccacctccgcgccgccgatcccctctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 accgccaccggcgaaatcgaagccgccctcaaccacctccgcgccgccgatcccctctta 409
Query: 241 gccaactgcatcgactctctccctcctcctcacttctcaaacgacgtcgtcgtcaccccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gccaactgcatcgactctctccctcctcctcacttctcaaacgacgtcgtcgtcaccccc 469
Query: 301 ttcttctccctcacgaagagcatcatctcccagcaactctccaacaaagcagcctccgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttcttctccctcacgaagagcatcatctcccagcaactctccaacaaagcagcctccgcc 529
Query: 361 atcgaatcccgcttcgtctccctct 385
|||||||||||||||||||||||||
Sbjct: 530 atcgaatcccgcttcgtctccctct 554
>gnl|LJGI|BP062232
Length = 373
Score = 131 bits (66), Expect = 8e-30
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 796 aaaggggtgttgccattgccagccaccactatcacagatcatcaacagatgggtggtggg 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaggggtgttgccattgccagccaccactatcacagatcatcaacagatgggtggtggg 314
Query: 856 gagtga 861
||||||
Sbjct: 313 gagtga 308
>gnl|LJGI|TC66555 similar to UniRef100_UPI000034F541 Cluster: HhH-GPD base excision
DNA repair family protein; n=1; Arabidopsis
thaliana|Rep: HhH-GPD base excision DNA repair family
protein - Arabidopsis thaliana, partial (32%)
Length = 803
Score = 73.8 bits (37), Expect = 2e-12
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 575 tggttaagggaattgggccttggtctgttcacatgttcatgattttcacgcttcaccgcc 634
||||||| ||||||||| ||||||||||||||||||||||||| ||| | || || | |
Sbjct: 74 tggttaatggaattgggtcttggtctgttcacatgttcatgatattctcactgcatagac 133
Query: 635 ctgatgttcttcc 647
|||||||||||||
Sbjct: 134 ctgatgttcttcc 146